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Domain assignment for A0A0B4VPG1 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  A0A0B4VPG1
Domain Number 1 Region: 124-282
Classification Level Classification E-value
Superfamily Retrovirus capsid protein, N-terminal core domain 3.73e-79
Family Retrovirus capsid protein, N-terminal core domain 0.000000062
Further Details:      
 
Domain Number 2 Region: 2-129
Classification Level Classification E-value
Superfamily Retroviral matrix proteins 1.81e-59
Family Immunodeficiency virus matrix proteins 0.00000284
Further Details:      
 
Domain Number 3 Region: 273-355
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 7.33e-33
Family Retrovirus capsid protein C-terminal domain 0.000016
Further Details:      
 
Domain Number 4 Region: 370-421
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 2.21e-17
Family Retrovirus zinc finger-like domains 0.0000568
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) A0A0B4VPG1
Sequence length 494
Comment (tr|A0A0B4VPG1|A0A0B4VPG1_9HIV1) Gag polyprotein {ECO:0000256|RuleBase:RU004487, ECO:0000256|SAAS:SAAS00998370} OX=11676 OS=Human immunodeficiency virus 1. GN=gag OC=Lentivirus; Primate lentivirus group. OH=9606
Sequence
MGARASILRGGKLDKWEKIRLRPGGKKRYMVKHLVWASRELEKFALNSDLLETSEGCKQI
MKQLKPALQTGTEELKSLFNTVATLYCVHTGTEVRDTKEALDKIEEDQNKIQQAKEADGK
VSQNYPIVQNLQGQMIHQPISPRTLNAWVKVVEEKAFSPEVIPMFTALSEGATPQDLNTM
LNTVGGHQAAMQILKDTINEEAAEWDRLHPVHAGPPAPGQAREPRGSDIAGTTSTLQEQI
AWMTSNPPVPVGDIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFFKTLRAE
QATQDVKNWMTDTLLVQNANPDCKTILRALGPGASIEEMMTACQGVGGPSHKARVLAEAM
SQTQSTILMQRSNFKGPKRIVKCFNCGKEGHIARNCRAPRKKGCWKCGXEGHQMKDCTER
QANFLGKIWPSHKGRPGNFLQSRPEPTAPPAPPEESFRFGEETTTSSQKQEPIDKELYPL
TSLKSLFGNDPSSQ
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Identical sequences A0A0B4VPG1

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