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Domain assignment for A0A0B5L1V1 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  A0A0B5L1V1
Domain Number 1 Region: 129-287
Classification Level Classification E-value
Superfamily Retrovirus capsid protein, N-terminal core domain 2.83e-78
Family Retrovirus capsid protein, N-terminal core domain 0.000000069
Further Details:      
 
Domain Number 2 Region: 2-134
Classification Level Classification E-value
Superfamily Retroviral matrix proteins 7.85e-63
Family Immunodeficiency virus matrix proteins 0.00000124
Further Details:      
 
Domain Number 3 Region: 278-360
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 4.94e-33
Family Retrovirus capsid protein C-terminal domain 0.0000145
Further Details:      
 
Domain Number 4 Region: 375-424
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 8.82e-16
Family Retrovirus zinc finger-like domains 0.000068
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) A0A0B5L1V1
Sequence length 492
Comment (tr|A0A0B5L1V1|A0A0B5L1V1_9HIV1) Gag polyprotein {ECO:0000256|RuleBase:RU004487, ECO:0000256|SAAS:SAAS00998370} OX=11676 OS=Human immunodeficiency virus 1. GN=gag OC=Lentivirus; Primate lentivirus group. OH=9606
Sequence
MGARASVLRGGKLDKWERIRLRPGGKKQYQLKHIVWASRELERFALNPGLLETSDGCKQI
IRQLQPALQTGTEELKSLYNTVATLYCVHAGIEVRDTKEALDKIEEEQNKIKQKAQQAEA
ADKGKVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKGFNPEVIPMFTALSEGATPQ
DLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVQAGPIAPGQIREPRGSDIAGTTSN
LQEQVTWMTSNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFFK
TLRAEQATQDVKNWMTDTLLVQNANPDCKTILRALGPGATLEEMMTACQGVGGPGHKARV
LAEAMSQANHGIMMQRGNFKGPRKIPKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMK
DRTERQANFLGKIWPSHKGRPGNFLQSRPEPSAPPAESFRFEETTPAPKQEPKDREPLIS
LKSLFGNDPLSQ
Download sequence
Identical sequences A0A0B5L1V1

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