SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for A0A0D0CHP4 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  A0A0D0CHP4
Domain Number 1 Region: 55-130
Classification Level Classification E-value
Superfamily BRCT domain 9.03e-16
Family 53BP1 0.075
Further Details:      
 
Domain Number 2 Region: 540-620
Classification Level Classification E-value
Superfamily BRCT domain 0.000000000000183
Family DNA ligase 0.033
Further Details:      
 
Domain Number 3 Region: 138-245
Classification Level Classification E-value
Superfamily BRCT domain 0.00000000000288
Family DNA topoisomerase II binding protein 1, TopBP1 0.054
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) A0A0D0CHP4
Sequence length 894
Comment (tr|A0A0D0CHP4|A0A0D0CHP4_9HOMO) Unplaced genomic scaffold scaffold_835, whole genome shotgun sequence {ECO:0000313|EMBL:KIK82227.1} KW=Complete proteome; Reference proteome OX=930991 OS=Paxillus rubicundulus Ve08.2h10. GN=PAXRUDRAFT_832338 OC=Paxillus.
Sequence
MRRRNKSHKVPNVKLRPLQVPTRSGPNAPVLTADASWDHSSDSELAPNASMVDRCPRPFK
DVTLCATGIIDKSTLFKMAFELGATSTSDFTDRVTHLIATEHGSAKYMCALERKIPIMNP
QWIMDAHAVWLRGDDAHLEEGVSKHRLPIFSGVILSLSGIEDISQRTTINSLLTAQQGVY
VKNLERPVKVTHLLCSGDTVTDKMKYAEKFNKRGEANIHLVWEEWFWDCLEFGGRFDERK
YQVSRPRPERKSLHERPASSIPVQDCIPGSHSGSAIPVDILKSHPSAPTPKFPIITDLPT
DPDEEELATVKKPVPAVTLQLWKSLLRPRGFELEGGKLMRSPSKSQATSSSSPSTPSRLH
PRLPVGNRRDNGKGKEKESVISTFRRTNSFAPVPQLEPSLRQRFRRNTFTATLGPEDAEG
SGLHDPGHPPGEESAEPGFFTGFTFRLLGEARCPKVRVAIERGGGIVADNEAEQVNFIIV
RLISGSKLYRDEPDEYERSKYRTECWLEHSVFNERICQPDENVSFTPFTTSMPIPGAETI
HLSLSGLDQSELCWIRRLSRALGVTLAPAFSRRSTHLLCPSGTGAKFDKALEWKIPVVSV
TWLEDMARQGTIPAVDGYFVGGSQEGAIFDGDVGHVDAHPQDPNHMDARDKGKGKEKEKG
TNQQMANITNSTQPMFAKNPGLLEDTALQDRAQGVLDVPHHDTHYRQEDIELRMEPPQCG
GLFGRPSAFLSNNSDPLEGGGSHISPSPPMPPPQSSSPVVEDPPIPLRRVPPFACVSPLR
PRPSAIAHKSSRVSIHEVQAQVPSSKSPSPMKLPPSSSIPDVFPDSPLGASSMMRPPDTD
AVAKALHESLTSLLGKRQISEEDEEKGTGRRGKRVRPGVRSGVSPFQHFHDQTG
Download sequence
Identical sequences A0A0D0CHP4
jgi|Paxru1|832338|fgenesh1_kg.835_#_1_#_Locus4106v1rpkm37.55

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]