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Domain assignment for A0A0Q4CDB1 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  A0A0Q4CDB1
Domain Number 1 Region: 11-132
Classification Level Classification E-value
Superfamily Transcription factor NusA, N-terminal domain 1.12e-37
Family Transcription factor NusA, N-terminal domain 0.00016
Further Details:      
 
Domain Number 2 Region: 207-284
Classification Level Classification E-value
Superfamily Prokaryotic type KH domain (KH-domain type II) 1.18e-30
Family Prokaryotic type KH domain (KH-domain type II) 0.00011
Further Details:      
 
Domain Number 3 Region: 138-205
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 2.65e-17
Family Cold shock DNA-binding domain-like 0.0039
Further Details:      
 
Domain Number 4 Region: 285-348
Classification Level Classification E-value
Superfamily Prokaryotic type KH domain (KH-domain type II) 1.9e-16
Family Prokaryotic type KH domain (KH-domain type II) 0.00044
Further Details:      
 
Domain Number 5 Region: 359-421
Classification Level Classification E-value
Superfamily Rad51 N-terminal domain-like 0.000000000000565
Family NusA extra C-terminal domains 0.0037
Further Details:      
 
Domain Number 6 Region: 435-477,506-524
Classification Level Classification E-value
Superfamily Rad51 N-terminal domain-like 0.000000298
Family DNA repair protein Rad51, N-terminal domain 0.065
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) A0A0Q4CDB1
Sequence length 544
Comment (tr|A0A0Q4CDB1|A0A0Q4CDB1_9SPHN) Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945} KW=Complete proteome; Reference proteome OX=1735670 OS=Novosphingobium sp. Leaf2. GN=ASE49_02930 OC=Sphingomonadaceae; Novosphingobium.
Sequence
MASAISANRAELLAIANAVATEKMIDKSIVIEAMEEAIQKSARNRYGAENDIRAKLDPRT
GDLRLWRVVEVVEEVEDYFKQVDLKQAEKIQKDAKVGDFIVDPLPPVDLGRIDAQSAKQV
IFQKVRDAERDRQFEEFKDRAGEVITGVIKSVEFGHVIVNLGRAEGVIRRDQQIPREAAR
VGERVRALVLRVERQNRGPQIFLSRAHPDFMKKLFAQEVPEIYDGVIEIKAAARDPGSRA
KIGVISHDHSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSEDTATFVVNALQPATVS
RVVIDEEESRIEVVVPDDQLSLAIGRRGQNVRLASQLTGSQIDIMTEAESSEKRQKEFVE
RSKMFEEELDVDETLSQLLVAEGFSELEEVAYIDLAELAAIEGFDEELGEELQSRAQEAL
DRREEGNREARRALGVEDALADLPHLTEAMLVTLGKAGIKTLDDLADLATDELIAKKRTE
QRRRDGTVNRRASRDEDKGGVLGDYGLNEEQGNEIIMAARAHWFDEEPAAEPELEEAANA
ESSQ
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Identical sequences A0A0Q4CDB1
WP_056768565.1.56929

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