SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for A0A1V4JCD2 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  A0A1V4JCD2
Domain Number 1 Region: 452-574
Classification Level Classification E-value
Superfamily NRDP1 C-terminal domain-like 4.84e-59
Family USP8 interacting domain 0.00000031
Further Details:      
 
Domain Number 2 Region: 281-348
Classification Level Classification E-value
Superfamily RING/U-box 0.000000000000373
Family RING finger domain, C3HC4 0.014
Further Details:      
 
Domain Number 3 Region: 336-400
Classification Level Classification E-value
Superfamily TRAF domain-like 0.000000000209
Family SIAH, seven in absentia homolog 0.014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) A0A1V4JCD2
Sequence length 575
Comment (tr|A0A1V4JCD2|A0A1V4JCD2_PATFA) E3 ubiquitin-protein ligase NRDP1 {ECO:0000313|EMBL:OPJ69972.1} KW=Complete proteome; Reference proteome OX=372326 OS=Patagioenas fasciata monilis. GN=AV530_008459 OC=Patagioenas.
Sequence
MGPRGLILGALGLVSLVSLVSPVSPGAGGAQGPPAGDAAQEHGYYLGQLFGQYGANGTLP
SEGLARLLGSLGLGRVRVVQIQHEELGHGHVTHLDLLEVQDDKHRHHHPLAEHAGDPPAS
PSPRPALVTSWTEPPPADPPGAGDTPAPPRRELSLLGRVLGLEHSGSDHPHHDCLNVTQL
LLNFGLGAVSRLTPEQFTLLCPALLYQIDSRVCIRHRDEVTTPPPGGTLWTDLRDPVALG
AGRARCSTAKEKMGPGECDARPAPLCSFGGNSAAQGSWPRGVLEEPVQAPHCEHAFCNAC
ITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQITCDNAVFGCTAVVRLDNLMSH
LNDCEHNPKRPVTCEQGCGLEMPKDELPSHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQ
LAEQKRDIQLLKAYMRAIRSVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTPD
AVLQAVIKRSLVESGCPTSIINELIENAHERNWPQGLATLETRQMNRRYYENYVAKRIPG
KQAVVVMACENQHMGEDMVLEPGLVMIFAHGVEEI
Download sequence
Identical sequences A0A1V4JCD2

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]