SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for B2UJB4 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  B2UJB4
Domain Number 1 Region: 500-686
Classification Level Classification E-value
Superfamily Ribonuclease H-like 4.7e-24
Family Retroviral integrase, catalytic domain 0.076
Further Details:      
 
Weak hits

Sequence:  B2UJB4
Domain Number - Region: 716-770
Classification Level Classification E-value
Superfamily mu transposase, C-terminal domain 0.000523
Family mu transposase, C-terminal domain 0.0098
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) B2UJB4
Sequence length 900
Comment (tr|B2UJB4|B2UJB4_RALPJ) Integrase catalytic region {ECO:0000313|EMBL:ACD29665.1} KW=Complete proteome; Reference proteome OX=402626 OS=Ralstonia pickettii (strain 12J). GN=Rpic_4577 OC=Burkholderiaceae; Ralstonia.
Sequence
MLDKAQLTELFDRFSTPPAGRKLILDARVQAPVRDVKSRGGNVITLLASRKMGGDVEIAT
ESRHIEFAAAVGLEYDNNVLEFYTQPCQLKLELIDEATGKTHSSTHVPDFLSIRNDGFML
EEWKSDVKLERLAERFPYRYVRSSDGLWRSPQIESQLAELGIRYRIFSDSAMPRRRVENL
LYLAHYFGPAAEPCPEEALAQLQLALREHGHLTFSELLAPPYDFSADLLNKAIADNLVAT
DLDSETLTEKRLFNLYRDDVLRDFMVANVKSSGTSPLTPFALDIADGTKFLFEGQELTIV
VVGEGSVVCNRPDGSSITLTREWLLSAHERNHITGIESARTQNRGLGSYSKEQLTTALQR
QALLESPARSSGVSERSLRRWSARQNVANANGADKVLALVPHCKQRGNRKRRLSDLQLAV
MERVIDEHWRTSEAINYKTCYRFLVVASEKEGVKSPSYPTLIQHIQALETNRDVRVRHGK
RLAYLQDTFVDVLYYDTPVHGSRPFQYVHIDHTQLDIEVVSSRTGDALGRPWLTVAIDAW
SRRILAFYLTFDPPSYISVMMAIRDMVRRFSRLPEFIVVDNGTDFLSDAFKTFLRAMGTH
LRFRPAGRPRHGAVLERLFGRLNTEYIHNLAGNTKATKNVRAVSGSHLPKKLAQWTLEAL
YRGVEYWATEYYDNEPHQALNESPRDAFQRGLRESGLRPQRQVVFNRDFLIATCPPVDRK
GTRMVNQQRGVKVDDRFYWSGVFTSPKVAGANIPVRYDPWDASSVYVLVRDHWHHAACRN
LYDLGQLTEAEQKAFSEEFRSRTGTRPTDKGAAQRLREFMRIFTPEGAMAVQFERQAENK
ALYNSLQMSSVTPVIAPHRFDFEDTASSTTSSRRDQKTTTAPTPPQRPAVLGDSTEFEDF
Download sequence
Identical sequences B2UJB4 C6BL08
402626.Rpic_4577 428406.Rpic12D_3504 WP_012430540.1.43321 WP_012430540.1.7259 gi|187926747|ref|YP_001893092.1| gi|241665079|ref|YP_002983438.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]