SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for B5RPG0 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  B5RPG0
Domain Number 1 Region: 16-318
Classification Level Classification E-value
Superfamily Variable surface antigen VlsE 1.96e-84
Family Variable surface antigen VlsE 0.00000727
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) B5RPG0
Sequence length 324
Comment (tr|B5RPG0|B5RPG0_BORDL) Variable large protein {ECO:0000256|RuleBase:RU363105} KW=Complete proteome OX=412419 OS=Borrelia duttonii (strain Ly). GN=BDU_8005 OC=Bacteria; Spirochaetes; Spirochaetales; Borreliaceae; Borrelia.
Sequence
MLLGCNSGGKDPEKVFLSKMVNLGKGFLDVFVAFSDMITETLGIKAYTKKSEIGTYFSKI
AETMESVKNKLQTEVSKNGKYEKVKTVVDEFVIGILDRIATGAKEAAKGATTDAAIGSAK
QNEDAVPGDTASVISLVKGIKEIVGVVLKDNEGNAEATKTGNTEQKSIGKLLGKKDDGTE
AHAASASASVGAVSGTDMLQAIAKSGEAANNEIKIEEAKNVAEIAAAKKDDDKEFGDTLK
DKDAVIAGGIALRAMAKNGRFAAKQDASYKYANAVNGVVASAVSKVLSTLTIAIRSRVDL
GLKEINKVLGEIKQGEGSAYRINE
Download sequence
Identical sequences B5RPG0
WP_012539784.1.78452 gi|203288891|ref|YP_002223886.1|NC_011264 412419.BDU_8005 gi|203288891|ref|YP_002223886.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]