SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for B9VGS5 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  B9VGS5
Domain Number 1 Region: 1-103
Classification Level Classification E-value
Superfamily Retroviral matrix proteins 8.24e-45
Family MMLV matrix protein-like 0.00000383
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) B9VGS5
Sequence length 243
Comment (tr|B9VGS5|B9VGS5_9GAMR) Truncated gag-pol polyprotein {ECO:0000313|EMBL:ACM17135.1} OX=590745 OS=Mus musculus mobilized endogenous polytropic provirus. GN=gag OC=Gammaretrovirus; unclassified Gammaretrovirus.
Sequence
MGQTVTTPLSLTLQHWGDVQRIASNQSVDVKKRRWITFCSAEWPTFNVGWPQDGTFNLSI
ISQVKSRVFCPGPHGHPDQVPYIVTWEALAYDPPPWVKPFVSPKLPPLPTAPVLPPGPSA
QPPSRSALYPALTPSIKSKPPKPQVLPDSGGPLIDLLTEDLPPYGAQPSSSARENDKEEA
ATTSEVSPPSPMVSRLRGRRDPPAADSIISQAFPLRMGGDGQLQYWPFSSSDLTLPFLKI
QVN
Download sequence
Identical sequences B9VGS5
B9VGS5_9GAMR

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]