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Domain assignment for D3PSE4 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  D3PSE4
Domain Number 1 Region: 5-586
Classification Level Classification E-value
Superfamily Prokaryotic type I DNA topoisomerase 4.45e-183
Family Prokaryotic type I DNA topoisomerase 0.00000000107
Further Details:      
 
Domain Number 2 Region: 614-655
Classification Level Classification E-value
Superfamily Zinc beta-ribbon 0.000000017
Family Prokaryotic DNA topoisomerase I, a C-terminal fragment 0.08
Further Details:      
 
Weak hits

Sequence:  D3PSE4
Domain Number - Region: 664-693
Classification Level Classification E-value
Superfamily Hypothetical protein Ta0289 C-terminal domain 0.00157
Family Hypothetical protein Ta0289 C-terminal domain 0.0024
Further Details:      
 
Domain Number - Region: 778-826
Classification Level Classification E-value
Superfamily Sigma3 and sigma4 domains of RNA polymerase sigma factors 0.00206
Family Sigma4 domain 0.022
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) D3PSE4
Sequence length 836
Comment (tr|D3PSE4|D3PSE4_MEIRD) DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952} KW=Complete proteome; Reference proteome OX=504728 OS=(Thermus ruber). GN=K649_14480 OC=Meiothermus.
Sequence
MPDSTLIVVESPAKAKSIQKMLGAGYEVRASKGHIADLPEHELGVDTQADFAPQYTVKKD
KQPIVEELKRAARGKRVLIATDPDREGEAIGWHVARLLGLNPQTPLRVEFHEITPKVVRA
AVQKPRPIDQSLVDAQQARRVLDRLVGYQLSPVLSMEFRRRALSAGRVQSVALRLLVERE
QEIEAFVPQEHWSLEGRFESEGQQFKAMLYSLGSERVQSGDKFLITSEKQAQEIARLAKD
VSGYRIGSIERRERRRNAPPPFITSTLQQAASSRLGWTASRTMRVAQKLYEGIDLPEGTV
GLITYMRTDSTRVSQEALAEVRAFIPRHFGPAYLPEKPNFFAGKKAANAQDAHEAIRPTS
TERTPDALRKHLSDEEYRLYQLIWQRFVASQMTPAVFDQTTVTVVGASGTPSGDLIFRAV
GSVLKFDGYLRVYGREEGDEAENRLPPLQENASARLLEVTPEQHFTEPPPRYTDASLVKT
LEEMGIGRPSTYAPTIDTLERRGYLERSGKSLKPTPLGREVTGYLIKSFPDVVAYDFTAQ
LESRLDEIEEGKAAWPKVVREFYEPFLKDFAKVPQKLCPKCGRPLELKVSRFGQFLGCTG
YPECKHTERLELKKEPEPIGEACPACGEGQLVRRHGRYGSFISCSRYPECKYTRDEAPST
GIECPKCHAGEVVQKTSKRGKPYYRCNNPACDFLSFDPLLPDKCPLCGWNEVAKGRSGKR
ACTNPGCERYGGPKLEALNQRRTKSSSKTSGTAKNKVKDRAKASATWADLEPFITKAGLT
PEQAEVARRTQGQQKQVAAVAKALNQPEEAVLKLFRQAMFKLRMEYGKARKEAVSA
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Identical sequences D3PSE4
WP_013013879.1.12476 WP_013013879.1.70660 WP_013013879.1.78507 WP_013013879.1.82968 gi|291295999|ref|YP_003507397.1|

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