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Domain assignment for F1LMS5 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  F1LMS5
Domain Number 1 Region: 726-941
Classification Level Classification E-value
Superfamily Concanavalin A-like lectins/glucanases 1.03e-106
Family Thrombospondin C-terminal domain 0.000000101
Further Details:      
 
Domain Number 2 Region: 599-724
Classification Level Classification E-value
Superfamily TSP type-3 repeat 6.41e-35
Family TSP type-3 repeat 0.00000525
Further Details:      
 
Domain Number 3 Region: 215-260
Classification Level Classification E-value
Superfamily Assembly domain of cartilage oligomeric matrix protein 1.31e-17
Family Assembly domain of cartilage oligomeric matrix protein 0.00096
Further Details:      
 
Domain Number 4 Region: 530-601
Classification Level Classification E-value
Superfamily TSP type-3 repeat 3.14e-16
Family TSP type-3 repeat 0.00021
Further Details:      
 
Domain Number 5 Region: 36-169
Classification Level Classification E-value
Superfamily Concanavalin A-like lectins/glucanases 0.00000000000000823
Family Laminin G-like module 0.018
Further Details:      
 
Domain Number 6 Region: 456-541
Classification Level Classification E-value
Superfamily TSP type-3 repeat 0.000000000124
Family TSP type-3 repeat 0.00021
Further Details:      
 
Domain Number 7 Region: 370-412
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0000000485
Family EGF-type module 0.012
Further Details:      
 
Weak hits

Sequence:  F1LMS5
Domain Number - Region: 288-342
Classification Level Classification E-value
Superfamily EGF/Laminin 0.000151
Family EGF-type module 0.019
Further Details:      
 
Domain Number - Region: 420-462
Classification Level Classification E-value
Superfamily EGF/Laminin 0.0108
Family EGF-type module 0.094
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) F1LMS5
Sequence length 959
Comment (tr|F1LMS5|F1LMS5_RAT) Thrombospondin-4 {ECO:0000313|Ensembl:ENSRNOP00000062272} KW=Complete proteome; Reference proteome OX=10116 OS=Rattus norvegicus (Rat). GN=Thbs4 OC=Muroidea; Muridae; Murinae; Rattus.
Sequence
SPTRGAFLLLHLVLQPWQRAGAQATPQVFDLLPSSSQRLNPAALQPVLTDPTLHELYVIS
TFKLQSKSSATIFGLYSSSDNSKYFEFTVMGRLNKAILRYLKDDGKIHLVVFNNLQLADG
RRHRILLRLSNLQRGAGSVELYLDCVQVDSVNNLPRAFSGLTQNPQAIELRTFQRKPQDF
LEELKLVVRGSLFQVASLQDCFLQQSEPLAATGTGDFNRQFLGQMTQLNQLLGEVKDLLR
QQVKETSFLRNTIAECQACGPLSFQSPTPNTLVPIAPPAPPTRPTRRCDSSPCFRGVRCT
DTRDGFQCGPCPDGYTGNGITCSDVDECKYHPCYPGVRCTNLAPGFRCDACPVGFTGPMV
QGVGINFAKTNKQVCTDVDECRNGACVLNSICINTLGSYRCGPCKPGYTGDQTRGCRTER
SCRNPEQNPCSVHAQCIEERQGDVTCVCGVGWAGDGYVCGKDVDIDSYPDEELPCSARNC
KKDNCKYVPNSGQEDADRDGIGDACDEDADGDGILNEQDNCVLTHNVDQRNTDKDIFGDA
CDNCRGVLNNDQKDTDGDGKGDACDDDMDGDGIKNILDNCPRVPNRDQQDRDGDGVGDAC
DSCPDVSNPNQSDVDNDLVGDSCDTNQDSDGDGHQDSTDNCPTVINSAQLDTDKDGIGDE
CDDDDDNDGIPDLVPPGPDNCRLVPNPAQEDSNNDGVGDICEADFDQDKVIDRIDVCPEN
AEITLTDFRAYQTVVLDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFNGVDFE
GTFHVNTQTDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSK
TGPGEHLRNSLWHTGDTSDQVRLLWKDSRNVGWKDKVSYRWFLQHRPQVGYIRVRFYEGS
ELVADSGVTIDTTMRGGRLGVFCFSQENIIWSNLKYRCNDTIPEDFQEFQIQTFDRLDN
Download sequence
Identical sequences F1LMS5
ENSRNOP00000062272

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