SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for I3MJ59 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  I3MJ59
Domain Number 1 Region: 94-184
Classification Level Classification E-value
Superfamily lambda repressor-like DNA-binding domains 8.44e-31
Family POU-specific domain 0.0000206
Further Details:      
 
Domain Number 2 Region: 224-318
Classification Level Classification E-value
Superfamily Homeodomain-like 1.34e-25
Family Homeodomain 0.00000865
Further Details:      
 
Domain Number 3 Region: 1-32
Classification Level Classification E-value
Superfamily Dimerization cofactor of HNF-1 alpha 0.000000000235
Family Dimerization cofactor of HNF-1 alpha 0.0016
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) I3MJ59
Sequence length 558
Comment (tr|I3MJ59|I3MJ59_ICTTR) HNF1 homeobox B {ECO:0000313|Ensembl:ENSSTOP00000011150} KW=Complete proteome; Reference proteome OX=43179 OS=(Spermophilus tridecemlineatus). GN=HNF1B OC=Sciuridae; Xerinae; Marmotini; Ictidomys.
Sequence
MVSKLTSLQQELLNALLSSGVTKEVLIQALEELLPSPSFGVKLETLPLSPGSGTDPDTKP
VFHTLTNGHTKGRLSGDEGSEDGDDYDTPPILKELQALNTEEAAEQRAEVDRMLSEDPWR
AAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVRKQREIL
RQFNQAVQSSGNMTDKSSQDQLLFLFPEFSQQSQGPGQSDDACSEPTNKKMRRNRFKWGP
ASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWF
ANRRKEEAFRQKLAMDAYSSNQTHSLNPLLTHSSPHHQPSTSPPNKLPGVRYSQQGSNEV
TSSSTISHHGNSAMVTSQSVLQQVSPASLDPGHNLLSPDGKMQIAVSGGGLPPVSTLTNI
HSLSHHNPQQSQNLIMTPLSGVMAIAQSLNTSQAQSVPVINSVASSLAALQPVQFSQQLH
SPHQQPLMQQSPGSHMAQQPFMAAVTQLQNSHMYAHKQEPPQYSHTSRFPSAMVVTDTSS
ISTLTNMSSSKQCPLQAW
Download sequence
Identical sequences I3MJ59
XP_005321563.1.77405

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]