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Domain assignment for P03334 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  P03334
Domain Number 1 Region: 217-346
Classification Level Classification E-value
Superfamily Retrovirus capsid protein, N-terminal core domain 2.43e-53
Family Retrovirus capsid protein, N-terminal core domain 0.000000195
Further Details:      
 
Domain Number 2 Region: 1-103
Classification Level Classification E-value
Superfamily Retroviral matrix proteins 1.35e-45
Family MMLV matrix protein-like 0.00000151
Further Details:      
 
Domain Number 3 Region: 481-527
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.000000000115
Family Retrovirus zinc finger-like domains 0.0001
Further Details:      
 
Weak hits

Sequence:  P03334
Domain Number - Region: 355-382
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 0.00275
Family Retrovirus capsid protein C-terminal domain 0.0095
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) P03334
Sequence length 538
Comment (sp|P03334|GAG_MSVMO) Nucleocapsid protein p10 KW=Complete proteome OX=11809 OS=Moloney murine sarcoma virus (MoMSV). GN=gag; OC=Gammaretrovirus. OH=10090
Sequence
MGQTVTTPLSLTLDHWKDVERLAHNQSVDVKKRRWVTFCSAEWPTFNVGWPRDGTFNRDL
ITQVKIKVFSPGPHGHPDQVPYIVTWEALAFDPPPWVKPFVHPKPPPPLLPSAPSLPLEP
PLSTPPQSSLYPALTPSLGAKPKPQVLSDSGGPLIDLLTEDPPPYRDPRPPPSDRDGDSG
EATPAGEAPDPSPMASRLRGRREPPVADSTTSQAFPLRTGGNGQLQYWPFSSSDLYNWKN
NNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGDDGR
PTQLPNEVDAAFPLERPDWEYTTQAGRNHLVHYRQLLIAGLQNAGRSPTNLAKVKGITQG
PNESPSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIWQSAPDIGRKLERLEDLRNKTL
GDLVREAERIFNKRETPEEREERIRREREEKEERRRTEDEQKEKERDRRRHREMSRLLAT
VVSGQRQDRQEGERRRSQLDCDQCTYCEEQGHWAKDCPRRPRGPRGPRPQTSLLTLDD
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Identical sequences P03334
GAG_MSVMO

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