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Domain assignment for Q2F7I9 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Q2F7I9
Domain Number 1 Region: 215-344
Classification Level Classification E-value
Superfamily Retrovirus capsid protein, N-terminal core domain 1.57e-52
Family Retrovirus capsid protein, N-terminal core domain 0.00000019
Further Details:      
 
Domain Number 2 Region: 1-103
Classification Level Classification E-value
Superfamily Retroviral matrix proteins 1.41e-43
Family MMLV matrix protein-like 0.00000383
Further Details:      
 
Domain Number 3 Region: 479-525
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.000000000000299
Family Retrovirus zinc finger-like domains 0.0000733
Further Details:      
 
Weak hits

Sequence:  Q2F7I9
Domain Number - Region: 353-380
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 0.00275
Family Retrovirus capsid protein C-terminal domain 0.0095
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Q2F7I9
Sequence length 536
Comment (sp|Q2F7I9|GAG_XMRV4) Nucleocapsid protein p10 KW=Complete proteome OX=356664 OS=Xenotropic MuLV-related virus (isolate VP42) (XMRV). GN=gag; OC=Gammaretrovirus; unclassified Gammaretrovirus. OH=9606
Sequence
MGQTVTTPLSLTLQHWGDVQRIASNQSVDVKKRRWVTFCSAEWPTFNVGWPQDGTFNLGI
ISQVKSRVFCPGPHGHPDQVPYIVTWEALAYDPPPWVKPFVSPKPPPLPTAPVLPPGPSA
QPPSRSALYPALTPSIKSKPPKPQVLPDSGGPLIDLLTEDPPPYGAQPSSSARENNEEEA
ATTSEVSPPSPMVSRLRGRRDPPAADSTTSQAFPLRMGGDGQLQYWPFSSSDLYNWKNNN
PSFSEDPGKLTALIESVLITHQPTWDDCQQLLGTLLTGEEKQRVLLEARKAVRGNDGRPT
QLPNEVNAAFPLERPDWGYTTTEGRNHLVLYRQLLLAGLQNAGRSPTNLAKVKGITQGPN
ESPSAFLERLKEAYRRYTPYDPEDPGQETNVSMSFIWQSAPDIGRKLERLEDLKSKTLGD
LVREAEKIFNKRETPEEREERIRREIEEKEERRRAEDEQRERERDRRRHREMSKLLATVV
IGQRQDRQGGERRRPQLDKDQCAYCKEKGHWAKDCPKKPRGPRGPRPQTSLLTLGD
Download sequence
Identical sequences Q2F7I9
GAG_XMRV4

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