SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for R4X6R9 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  R4X6R9
Domain Number 1 Region: 313-453
Classification Level Classification E-value
Superfamily Outer arm dynein light chain 1 3.66e-27
Family Outer arm dynein light chain 1 0.0013
Further Details:      
 
Weak hits

Sequence:  R4X6R9
Domain Number - Region: 216-265
Classification Level Classification E-value
Superfamily CAPPD, an extracellular domain of amyloid beta A4 protein 0.085
Family CAPPD, an extracellular domain of amyloid beta A4 protein 0.0047
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) R4X6R9
Sequence length 620
Comment (tr|R4X6R9|R4X6R9_TAPDE) Leucine rich repeat protein {ECO:0000313|EMBL:CCG80616.1} KW=Complete proteome; Reference proteome OX=1097556 OS=deformans). GN=TAPDE_000142 OC=Taphrinomycetes; Taphrinales; Taphrinaceae; Taphrina.
Sequence
MDGDAYIQALTRYIQKEGKRLAQRNPDPPVAISLHHLYYLLTRIDDLEVPIGPLNIRLED
LNRDSQASTSSSSNYVSFRKKNSDAASIRSVSSIRSVMSTVGTSVWTGFGVFGSSIRTEE
LIAEDLKQLYSAFCKLPTLRICPNPSIKLINGFEEYPFDTAVPLLAFKNLQFLEIFGYSP
KQFYGWDEVSEQVRSLVVKRCGINDVALLTIGVVKEELEKKRRKAERATRHWQSISDNGN
SVPSSPRPTTQNSYFQQKVQSMEPADRPRSASPNSMLCRPNNTSRKHSRYDRLQSSTSLM
SECPPPFVLPPGKWRFLRFLSLSDNALSTISVEALAPLAANLNFLDLSRNNFTTIPAALA
TLSSLRSLDMAKNQIESLHSLLQSPLPGISTLNLRANKLATIAGIDRLPSLERVDLRENQ
LRDPTEVARLNAAPNFSEMWIAGNPFTRTHYDHRTTIFNVFRANSGMADDITLDGRKPGI
LEKRSLEPRATESVPPPSKAAQLKVANSITSTPSKLDAEIASTNDLPDEELSVKLKKKVH
KSRVIDLSSPGKANPGRDLSTSPASRHSVDTPAKAEMREKANGEEYRKKIEALKQEVGSG
WIRVINEDSFRDKQNEVRQE
Download sequence
Identical sequences R4X6R9

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]