SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for S3JZ00 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  S3JZ00
Domain Number 1 Region: 9-591
Classification Level Classification E-value
Superfamily Prokaryotic type I DNA topoisomerase 2.62e-182
Family Prokaryotic type I DNA topoisomerase 0.00000000121
Further Details:      
 
Domain Number 2 Region: 578-615
Classification Level Classification E-value
Superfamily Zinc beta-ribbon 0.00000000000204
Family Prokaryotic DNA topoisomerase I, a C-terminal fragment 0.047
Further Details:      
 
Weak hits

Sequence:  S3JZ00
Domain Number - Region: 661-690
Classification Level Classification E-value
Superfamily Hypothetical protein Ta0289 C-terminal domain 0.0772
Family Hypothetical protein Ta0289 C-terminal domain 0.0034
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) S3JZ00
Sequence length 710
Comment (tr|S3JZ00|S3JZ00_TREMA) DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952} KW=Complete proteome; Reference proteome OX=1125699 OS=Treponema maltophilum ATCC 51939. GN=HMPREF9194_00772 OC=Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.
Sequence
MKKNKEHSTLIIVESPAKAKTIEKYLGPGYTVKASMGHLIDLPKSRMAIDIEHNFEPEYI
TVRGRAPLLKELQKDAKKAGEVLLASDNDREGEAIAWHLRNSLGEKTAAAIKRIVFNEIT
PAAIKEAVLHPADIDEAKVNAQKARRVLDRLVGYNLSPLLWKKVKNGLSAGRVQSVALRL
LCEREKAVEEFLPEEYWSLEADFKKGKTSFTAELVQYKGKKVELKSEQSVQDIIKEIKNA
DCVVADIKTSDRVLKPKAPFTTSKLQQAAANKLGFTSRKTMQIAQQLYEGVNIGSSRVGL
ITYMRTDSVRISDTAIEDVRNWLQKNFPAELPSKPVHYSVEKKAQDAHEAIRPTYTEYTP
DYVKEYLNRDQLRLYTLIWEAFVSSQMNNAKSRTTSVDIKAGDALFRISGSKIVEKGFYN
VIKLLSSKEDNGSRLPSLTAGEKLEAVKFSPEQHFTQGPARYTDASIVKTLEEKGIGRPS
TYAPIISVLLDRYYVTRNNRQLVPTALGRIINDILVESFPEVINENFTAEVERDLDSVEE
NRVKWTKMMGDFYFPFHKRVEEVMATLESYKGTMDEPTDKVCELCGKPMVKKLGRFGYFL
ACSGFPECKNTRSVPLAKCPREGCNGEIVARKTKGRGKEFYGCTNYPECDFISHFKPLNA
VCPKCGRFLVEKYDKKNGTYKSCINPDCDYLHTAEDDTASSAAEAQAADV
Download sequence
Identical sequences S3JZ00
WP_016525066.1.59261

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]