SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for A0A1A6GL13 from Uniprot 2018_03 genome

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  A0A1A6GL13
Domain Number 1 Region: 48-113
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 6.41e-25
Family SCAN domain 0.00027
Further Details:      
 
Domain Number 2 Region: 509-559
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00000000000000424
Family Classic zinc finger, C2H2 0.0086
Further Details:      
 
Domain Number 3 Region: 366-417
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.000000000000135
Family Classic zinc finger, C2H2 0.0052
Further Details:      
 
Domain Number 4 Region: 294-337
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00000000444
Family Classic zinc finger, C2H2 0.011
Further Details:      
 
Domain Number 5 Region: 336-377
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00000000497
Family Classic zinc finger, C2H2 0.014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) A0A1A6GL13
Sequence length 559
Comment (tr|A0A1A6GL13|A0A1A6GL13_NEOLE) Uncharacterized protein {ECO:0000313|EMBL:OBS66405.1} KW=Complete proteome; Reference proteome OX=56216 OS=Neotoma lepida (Desert woodrat). GN=A6R68_05050 OC=Muroidea; Cricetidae; Neotominae; Neotoma.
Sequence
MPQGRCYAARSAQASREQGHLRTVKKEEDNDGYASVQTARPQTLNCPGQELFRQLFRQLR
YHESSGPLETLRQLQELCRWWMRPDVLSKAQMLELLVLEQFLSILPGELRTWPKRDSGTA
PEGGKPQIKSRKFILKQDPSEHTETFAVPSVCPKTSVSEGTELKEPFEQKSRLQKSCGIP
IQVKEVKEGTDISNRTGRESEVLGXSNILDIKHVKCVSVSKKKRSFKHGRDRYFRKRSHY
YNKKYGEGLRDTAEEFGVCQSIHIGLRESEKDTWGKDFILCXHHRQERSVHTSEEKHLDC
SQGGKSFCCKSYVLEHQRIHTQEKLYKCTGCRKTFRIHTREKCYKCRECGKAFRWSSNEL
MSILKKPFWCQECGKTFTHKRSPLDHKGIHSGKRRFKCNLCEKSFDRNYRLVNHQRIQAI
ERPFQTQWHGKDFVGIRVHSVDQRKHSRTLQSERSLHSDNPGLSSCXNARLSSQELKLSE
KKPHKECEKPDKSSRFIALQNVPTEIGCHKCSICGKTFSKHSQLISHRRFHTRERPFKCK
VCGKTLRWSSNLALHMKNH
Download sequence
Identical sequences A0A1A6GL13

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]