SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for A8DGP0_9HEPC from UniProt viral sequences

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  A8DGP0_9HEPC
Domain Number 1 Region: 2422-2983
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 1.43e-139
Family RNA-dependent RNA-polymerase 0.00000000000000338
Further Details:      
 
Domain Number 2 Region: 1027-1212
Classification Level Classification E-value
Superfamily Trypsin-like serine proteases 1.21e-106
Family Viral proteases 0.0000000193
Further Details:      
 
Domain Number 3 Region: 1346-1646
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 5.85e-57
Family RNA helicase 0.0000000000572
Further Details:      
 
Domain Number 4 Region: 1220-1351
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 1.52e-25
Family RNA helicase 0.000000338
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) A8DGP0_9HEPC
Sequence length 3011
Comment AC=A8DGP0; DE=RecName: Full=Genome polyprotein; OS=Hepatitis C virus subtype 1a. OC=Viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; OC=Hepacivirus.
Sequence
MSTNPKPQRKTKRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRG
RRQPIPKARRPEGRTWAQPGYPWPLYGNEGCGWAGWLLSPRGSRPSWGPNDPRRRSRNLG
KVIDTLTCGFADLMGYIPLVGAPLGGAARALAHGVRVLEDGVNYATGNLPGCSFSIFLLA
LLSCLTVPTSAYQVRNSTGLYHVTNDCPNSSIVYEAVDAILHTPGCVPCVREGNVSKCWV
AMTPTVATRDGKLPTTQLRRHIDLLVGSATLCSALYVGDLCGSVFLVGQLFTFSPRLHWT
TQDCNCSIYPGHISGHRMAWDMMMNWSPTAALVVAQLLRVPQAILDMIAGAHWGVLAGIA
YFSMVGNWAKVLVVLLLFAGVDAETHVSGGSVAHGTSVFTNIFNSGAKQNIQLINTNGSW
HINRTALNCNDSLNTGWIAGLLYYHKFNSSGCAERLASCRPLTDFDQGWGPISHANVNGP
DQRPYCWHYPPKPCGIVSARSVCGPVYCFTPSPVVVGTTDKSGAPTYNWGGNDTDVFVLN
NTRPPLGNWFGCTWMNSTGFTKVCGAPPCAIGGAGNKTLFCPTDCFRKHPEATYSRCGSG
PWITPRCLVNYPYRLWHYPCTINYTIFKVRMYVGGVEHRLEAACNWTRGERCDLEDRDRS
ELSPLLLSTTQWQVLPCSFTTLPALSTGLIHLHQNIVDVQYLYGVGSSIASWAIKWDYVV
LLFLLLADARICSCLWMMLLISQAEAALENLVVLNAASLAGTHGLVSFLVFFCFAWYLKG
KWVPGAVYALYGMWPLLLLLLALPQRAYALDTEVAASCGGAVLAGLTVLTLSPYYKHYIS
WCLWWLQYFLTRVEAHLHVWVPPLNARGGRDAVILLTCAVYPTLIFDITKLLLAVFGPLW
ILQASLLKVPYFVRVQGLLRICALARKMAGGHYVQMAIIKLGALTGTYVYNHLTPLRDWA
HNGLRDLAVAVEPVVFSPMETKLITWGADTAACGDIINGLPVSARRGREILLGPADGMVS
KGWRLLAPITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWT
VYHGAGTRTIASPKGPVIQMYTNVDKDLVGWPAPQGARSLTPCTCGSSDLYLVTRHADVI
PVCRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGIFRAAVCTRGVAKAVDFIPVEN
LETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAA
TLGFGAYMSKAHGIDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICDECHS
TDATSILGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIQEVALSTTGEIPFYGKAI
PLEVIKGGRHLIFCHSKKKCDELAAKLVALGVNAVAYYRGLDVSVIPTSGDVVVVATDAL
MTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPGIYR
FVAPGERPSGMFDSSVLCECYDAGCAWYELTPAETTVRLRAYMNTPGLPVCQDHLEFWEG
VFTGLTHIDAHFLSQTKQSGENFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHG
PTPLLYRLGAVQNEVTLTHPITKYIMTCMSADLEVVTSTWVLVGGVLAALAAYCLSTGCV
VIVGRIVLSGKPAIIPDKEVLYQEFDEMEECSQQLPYIEQGMMLAEQFKQKALGLLQTAS
RQAEVISPAVQTNWQKLEAFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTAAVTSP
LTTSQTLLFNILGGWVAAQLAAPGAATAFVGAGLAGAAIGSVGLGKVLVDILAGYGAGVA
GALVAFKIMSGEVPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLI
AFASRGNHVSPTHYVPESDAAARVTAILSSLTVTQLLRRLHQWISSESTTPCSGSWLRDI
WDWICEVLSDFKTWLKAKLMPQLPGIPFVSCQRGYKGVWRGDGIMHTRCHCGAEITGHVK
NGTMRIVGPRTCRNMWSGTFPINAYTTGPCTPLPAPNYTFALWRVSAEEYVEIRQVGDFH
YVTGMTTDNLKCPCQVPSPEFFTELDGVRLHRFAPPCKPLLREEVSFRVGLHEYPVGSQL
PCEPEPDVAVLTSMLTDPSHITAETAGRRLARGSPPSVASSSASQLSAPSLKATCTANHD
SPDAELIEANLLWRQEMGGNITRVESENKVVILDSFDPLVAEEDEREISVPAEILRKSRR
FAQALPVWARPDYNPPLVETWKKPDYEPPVVHGCPLPPPQSPPVPPPRKKRTVVLTESTL
PTALAELATKSFGSSSTSGITGDDTTTSSEPAPPGCPPDSDAESYSSMPPLEGEPGDPDL
SDGSWSTVSSEADTEDVVCCSMSYTWTGALVTPCAAEEQKLPINALSNSLLRHHNLVYST
TSRSACQRQKKVTFDRLQVLDSHYQDVLKEVKAAASKVKANLLSVEEACSLTPPHSAKSK
FGYGAKDVRCHARKAVNHINSVWKDLLEDSVTPIDTTIMAKNEVFCVQPEKGGRKPARLI
VFPDLGVRVCEKMALYDVVSKLPLAVMGSSYGFQYSPGQRVEFLVQAWKSKKCPMGFSYD
TRCFDSTVTESDIRTEEAIYQCCDLDPQARVAIKSLTERLYVGGPLTNSRGENCGYRRCR
ASGVLTTSCGNTLTCYIKAQAACRAAGLQNCTMLVCGDDLVVICESAGVQEDAASLRAFT
EAMTRYSAPPGDPPQPEYDLELITSCSSNVSVAHDGAGKRVYYLTRDPTTPLARAAWETA
KHTPVNSWLGNIIMFAPTLWVRMIMMTHFFSILIARDQLEQALDCEIYGACYSIEPLDLP
PIIQRLHGLSAFSLHSYSPGEINRVAACLRKLGVPPLRAWRHRARSVRAKLLSRGGRAAI
CGKYLFNWAVRTKLKLTPIAAAGRLDLSSWFTAGYSGGDIYHSVSHARPRWFWFCLLLLA
AGVGIYLLPNR
Download sequence
Identical sequences A8DGP0
A8DGP0_9HEPC

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]