SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for B0B3N4_9HEPC from UniProt viral sequences

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  B0B3N4_9HEPC
Domain Number 1 Region: 1-185
Classification Level Classification E-value
Superfamily Trypsin-like serine proteases 3.85e-92
Family Viral proteases 0.000000141
Further Details:      
 
Domain Number 2 Region: 320-619
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 3.67e-52
Family RNA helicase 0.000000000453
Further Details:      
 
Domain Number 3 Region: 194-325
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 2.62e-24
Family RNA helicase 0.000000933
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) B0B3N4_9HEPC
Sequence length 685
Comment AC=B0B3N4; DE=SubName: Full=NS3/4A protein; Flags: Fragment; GN=Name=NS3/4A; OS=Hepatitis C virus. OC=Viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; OC=Hepacivirus.
Sequence
APITAYAQQTRGLLGTIVTSLTGRDKNVVTGEIQVLSTATQTFLGTTVGGVMWTVYHGAG
SRTLAGAKHPALQMYTNVDQDLVGWPAPPGAKSLEPCTCGSADLYLVTRDADVIPARRRG
DSTASLLSPRPLACLKGSSGGPVMCPSGHVAGIFRAAVCTRGVAKALQFVPVETLSTQAR
SPSFSDNSTPPAVPQSYQVGYLHAPTGSGKSTKVPAAYVAQGYNVLVLNPSVAATLGFGS
FMSRAYGIDPNIRTGNRTVTTGAKLTYSTYGKFLADGGCSGGAYDVIICDECHAQDATSI
LGIGTVLDQAETAGVRLTVLATATPPGSITVPHSNIEEVALGSEGEIPFYGKAIPIALLK
GGRHLIFCHSKKKCDELASRLRGMGLNAVAYYRGLDVSVIPTTGDVVVCATDALMTGFTG
DFDSVIDCNVAVEQYVDFSLDPTFSIETRTAPQDAVSRSQRRGRTGRGRLGTYRYVTPGE
RPSGMFDSVVLCECYDAACSWYDLQPAETTVRLRAYLSTPGLPVCRDHLDFWESVFTGLT
HIDAHFLSQTKQQGLNFSYLAAYQATVCARAQAPPPSWDETWKCLIRLKPTLQGPTPLLY
RLGPVQNEICLTHPVTKYITACMSADLEVTTSTWVLLGGVLAALAAYCLSVGCVVIVGHI
ELGGKPALVPDKEVLYQQYDEMEEC
Download sequence
Identical sequences B0B3N4
B0B3N4_9HEPC

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]