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Domain assignment for gi|190336507|ref|YP_001960940.1| from NCBI viral sequences

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|190336507|ref|YP_001960940.1|
Domain Number 1 Region: 1320-1639
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 5.78e-48
Family RNA-dependent RNA-polymerase 0.064
Further Details:      
 
Domain Number 2 Region: 608-726
Classification Level Classification E-value
Superfamily Clavaminate synthase-like 2.47e-18
Family AlkB-like 0.0024
Further Details:      
 
Domain Number 3 Region: 933-1172
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 0.00000000000957
Family G proteins 0.068
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|190336507|ref|YP_001960940.1|
Sequence length 1708
Comment RNA-dependent RNA polymerase [Lettuce virus X]
Sequence
MSRIRNVLDRIRDPSVQTAICESAYTQIRPVLKEALINCPYALNDNEADALENLGISVNP
YAVQTHTHAAAKAIENQMLQIVGHHLPKSKVTFLFLKRSKLRYLRRAAALKDTFMNKEVE
PKDFFRYDSDTIHSRIQEVSTSVAYMSDTLHFMTLEELAHLFESSPRLDTLLATVVLPVE
ALHRKTSLHPAVYSINYNKDGFEYIPGNHGGGAYFHPYNTLEWLKVRQLECAPRYKFGRP
FTLTFQMVESLGANHLFIIRRGLFETPQYRTFCRNTFVLFPKIFHPASSNANRPITKTKA
MQMWLYVKAVKAVTERDIYAKIHQVLPTNELELYEPDELVHLANYFFFLSNLKSYTCYED
LLSGGLIKRLTRPVRTAVTRFIEFFAGRNDFNKLMDALKWEPFTYTLEPAVYKTKVGSHV
IHQTMEATGRTESAVIRDLLAAHQNPDLLQPEDLIPTEPPTFLDRTLFQGSADSTQPRAD
HQRDAAPTRPTTARTTEDRQAGGPEPEPELETTTTPAPTPSTLVTEAAGTTPSTSHPPQT
EASTSTGMPHVTQDPNPMPQSAATDEEERHKRDPTKMCVCASGWSPEPFFDLVPGSLVTK
LKTRDAFFFSTRPDITYGHDKVSYARNDWPLVLTDFLRTVGFQANGALLQIYAKGPGIPW
HKDDEPCYDGQPILTLNFGQATFEFSNGVKMPLKDGEYFVMAGPWLKLKHRVTNCSSNRM
SITFRTHTHTIFGHPLPGDSVNPKPEDKPRPAPGNQTPPAPASKETPPPQSTHQATDDST
SPFQANTSNRTRGQAPPHPQTAGHHDGDSNELPKKNFSHSPPWNAWIPLLNAHGFNGHEQ
QLNPEGFLIIPISDVKQLPHCPFPDTVPKLLQENLKRMRRFPTPITLRAKRAAAYASDVK
NNRTGKLLSSMDLAWKASLAYKMQFDDLILPGIVIHGCGGSGKSQMIQSFMASPLAEENN
VTVITPTVELRNDWATKVPNVTAENFKTFEKAMIQPCNSVVVFDDYTKLPPGYIEALLMH
HRNVDLFILTGDSRQSVYHESNSEAYISTLSEAVEVFEPYSEFYVNATHRNVTGLANKLG
VYSERQGKLRVSFSTHHLKGSRIPLLVPSNLKRNAFLDVGHRTMTYAGCQGLTAPKVQIL
LDNHTEMCSERVLYTALSRAVDQIHFINTGPNSSDWWAKLESTPYLKAFIDTYRDERTEA
LISAPREPTPPQVPAPKTHFPPAPKHLLEPLVASLTDKESRELFNENTGMSNAIQTEDPV
VQLFQHQQAKDETLYWATIEARLSISTPEANVKEFALKRDVGDVLFANYAKIMHLPDQPV
PFDPRMWEISAAEVKNVYLSKPVGNLVNAATRQSPDFPSDKIALFLKSQWVKKTEKLGVL
KVKPGQTIASFMQETVMLYGTMARYLRKMRARYQPDNIFINCEKTPEDLNEFVKTRWNFN
VQAHTNDFTAFDQSQDGAMLQFEVLKAKFFNVPADIIEGYITIKLNANIFLGTLSIMRLS
GEGPTFDANTECSIAYNATRFHLDDSVAQVYAGDDMALDHKVPEKASFIRLQQKLKLTSK
PLYPTQTPGDYAEFCGWSFTPDGIMKASLKMHASIELQKRINNFHESARSYALDLKYAYD
MGDLLHDHLTEAEAEYHVQSVRDMHLAHQQDVLVNGAASPPTSPVHSGSQARSSFVTKLV
GSAKTKARNASKRRAKVRVVDLSTNTFA
Download sequence
Identical sequences B3CJG2
YP_001960940.1.72255 B3CJG2_9VIRU gi|190336507|ref|YP_001960940.1|

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