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Domain assignment for gi|21449931|ref|NP_659391.1| from NCBI viral sequences

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|21449931|ref|NP_659391.1|
Domain Number 1 Region: 2257-2715
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 1.43e-142
Family RNA-dependent RNA-polymerase 0.0013
Further Details:      
 
Domain Number 2 Region: 1313-1600
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 7.29e-50
Family RNA helicase 0.091
Further Details:      
 
Domain Number 3 Region: 1994-2226
Classification Level Classification E-value
Superfamily Trypsin-like serine proteases 6.07e-41
Family Viral proteases 0.0000034
Further Details:      
 
Domain Number 4 Region: 1190-1316
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 2.34e-21
Family RNA helicase 0.035
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|21449931|ref|NP_659391.1|
Sequence length 3071
Comment polyprotein [Sorghum mosaic virus]
Sequence
MAGAWKTVSHKWKPDLDSPRDVRKVMEHFAAKHQTYDAKRAEAHNAKRLRRTFILETSDE
IPKRAPIKKQVYVEKEDHNPTQHLKYEGFDVIKNKRVEKPVTTSVTKLIKDLLKLNQETN
INIELVGKKHNSTTRLSLVKKDKKVYLHCKTRHKMGNYKRKVTNIQAHWESYLTAVSKCY
GSLSHKDEQRIRKGDSGITYIRNGALFIIRGKHQGKIINSIEEVNFINEIDHFSDPQAND
FWRGYTDAYVANRAISTTHTEHTPTINLEKCGKRMALLEILLHSTLKITCTHCNTDDLEL
SDDEFGDKLFKTLVRIEEKQAEYLAEDQKLKRMITLLKERCNPKFEHLPLLWQVAETKGH
YTDNQSKQIMGVAEALIRVNTLKVEEAVKASASLLEISRWYKNRKESSKEDTLGSFRNKI
SPKSTIKMALMCDNQLDSNGDFLWGKREYHAKRFFTNYFEAVESKDTYDKHVTRFNPNGQ
RKLFIRKLVIPLDFQKIRDSFVGIQVQKQALSKACLRKIENNYICPCCCVTTEFGQPVYS
EIIPPTKGHITIGNPTDPKIVDLPNSDPPMMYIAKDGYCYLNIFLAAMINVNEDSAKDYT
KFLRDELIERLGKWPKLKDVATACYALSVMFPEIKNAELPQILVDHEHKTMHVIDSYGSL
SVGFHILKANTIGQLIKMQYESMESEMREYVVGGTLTHNTFSSLMKLLIKNMFKPQEMKK
IIEEEPFLIMMAVTSPTVLIAMYNNCYLEQAMSYWIVKNQGVAAIFAQLEALAKETSQAE
LIVQQMSILEKASTQLRFAVSGISHVDPAKRLLWSHLEAMTTRSEMNRELIEEGYALYDE
RLYSLMEKSYVDLLNQAWADLPLHSKLYSIWRVYEVKKYYKPCLVLKRGVDLGAMYNISA
THQISSLVQKSRDQVSSISTKLHHSLCNKIQSMQRRAISTIYWFVPDIFRLIHIFIILGL
LSTIANAVILTMQDYKKLQKQVREEEYEREVSEVRSIHAKLMKIHEDELTSEQFIAYIRE
NHPRLEEATLDLTGTGVIHEAKSNFETNLEQAMAVGTLLTMVLDPIKSDAVFKVLNKIKT
CINTYEQSATFPTVNFSSLLGTQVTHQSVELDDPLTLNTDKQLTIDFDTTQDLPADTFSN
DVTFEQWWSNQLENNRTVPHYRIGGEFVEFTRQNAATVSIGIAHNRIEKEFLLRGAVGSG
KSTGLPYHLSQRGKVLLLEPTRPLAENVCRQLQGPPFNVSPTLQMRGLSSFGSTPITIMT
SGFALHMYANNPDKISNYDYIIFDECHIMEAPAMAFYWLLKEYNFDGKIIKVSATPPGRE
CEFSTQYPVDIHVCENLTQNQFVLELGTGSKADATKYGNNILVYVASYSDVDSLARALTE
HHYSVIKVDGRTMKQNTTGIHTNGTDARKCFVVATNIIENGVTLDVDVVVDFGLKVSAEL
DVDNRAIMYRKVSISYGERIQRLGRVGRTKPGTIIRSGVTMKGLQEIPAMIATEAAFLCF
AYGLKVITHNVSTTHLAKCTVKQARTMMHFELSPFIMSELVKFDGSMHPQIHEKLKKYKL
RDSVIMLRTNAVPYSNVHNWLTVKDYNKIGCNLELGEYIKIPYFVRGVSEKLYSEIYDIV
LKYGSTNCYGRLSSACAGKVAYTLRTDPYSLPRTIAIINRLICEEHAKREHYNTMISNPS
SSHAFSLSGIVNMLASRYMKDHSKENIEKLTRVKDQLMEFQCSGSDFKNPEDLMEFGALT
TVIHQGLDATANCLQLEGRWNQSLIQRDLMISAGVFVGGALMIWCLFRKWSEMKVCHQGK
NKRSRQKLRFKQARDNKTAYDISGSQEAIGENFGTAYTKKGKNKGTKVGLGVKQHKFHMM
YGFDPQDYNLIRFVDPLTGATLDEQIHADIRIIQEHFADIREEAINNDQLERQHVYANPG
LRAFFIQHGSSNALRVDMTPHEPLRVVTNNNIAGFPEYEGTLRQTGRPIVVSINQVPEPN
EVEVEHESKSMMVGLSDYTPISNQLCIIENHSNDVRQCMYAIGYGSYLITPAHLFKYNNG
EITIRSTRGLYKMRNSIQVKIHPIECRDMTIIQLPKDFPPFPQRLKFEMPNRDHRVCLVG
VNFQQNFSSCVVSESSVVAPKGNCTFWKHWISTTDGQCGLPLVDVINKSIVGIHSLAATN
SKTNFFVTIPDNFEAYLHNLVTMNKWEMGWHYNPNLIAWNGLNLVDSAPSGKFKTAKLVK
DIMCEVTEQGLMHETWLTNDIKDNLQVVAKCPGQLVTKHVVKGQCPHFSLYLSTHEDANT
FFKPLLGKYDKSRLNKAAFIKDLTKYAKPTYIGEVDPKTFQKAVDRVKEILWKVGMQTCN
YITDEEEIFKSLNMNAAVGALYTGKKKDYFMDFSDTDKEEILKQSCERLYEGQLGVWNGS
LKAEIRPIEKTEANKTRSFTAAPLETLLGGKVCVDDFNNQFYSHHLEGPWTVGITKFYGG
WDRLLNKLPEGWVYCDADGSQFDSSLTPYLINAVLDIRLHFMEDWNIGERMLKNLYTEIV
YTPIATPDGSVIKKFKGNNSGQPSTVVDNTLMVIIAFNYTMLSCGIEADMIDEICRMYAN
GDDLLLAIRPDYEHLLDDFSKHFSDLGLNFDFTSRTRDREELWFMSTRGIKIDGMYIPKL
EQERIVAILEWDRSLLPQYRLEAICAAMVEAWGYPQLLHEIRKFYAWILEMQPFATLAKE
GLAPYIAETALRNLYTGAGIKEGELDIYYTQFIKDLPEYVEDELIDVFHQAGGGTVDAGA
NTADATAQAQREAAAKAQQDADAKKRADDEAAEKQRQDAAAKKKADDDARAKADADAKKR
ADDEAAQRTQNQKDKDVDAGTSGTVTVPKLKAMSKKMRLPQAKGRNILHLDFLLGYKPQQ
QDISNTRATRAEFDRWYAAVQKEYELDDTQMTVVMSGLMVWCIENGCSPNINGVWTMMDG
EEQRTFPLKPIIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDFNLAR
YAFDFYEITSRTTARAKEAHMQMKAAAVRGSNTRMFGLDGNVGESQENTERHTAGDVSRN
MHTLLGVQQHH
Download sequence
Identical sequences Q8QXL2
gi|21449931|ref|NP_659391.1| Q8QXL2_9POTV NP_659391.1.69759

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