SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|388570682|ref|YP_006383556.1| from NCBI viral sequences

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|388570682|ref|YP_006383556.1|
Domain Number 1 Region: 634-858,984-1105
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 2.89e-41
Family DNA polymerase I 0.0061
Further Details:      
 
Domain Number 2 Region: 379-507,547-572
Classification Level Classification E-value
Superfamily Ribonuclease H-like 0.00000000000091
Family DnaQ-like 3'-5' exonuclease 0.059
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|388570682|ref|YP_006383556.1|
Sequence length 1254
Comment DNA polymerase [Goose adenovirus 4]
Sequence
MEEFDMDWISDEELQTYDAPSETCDKDPPDPIFCSYPARPSNKNKNYPVPIIHSKIGRDS
LHIRTLPPKQIKEMNKLFRSMVGKLVKCGVYYYQGEPYKIRATPFMKGLRKYLTLHKFLG
SNHRHYKRIDYSFYAENPIERLSVFKPSNIQLVQLRGKTATIQKQWQCDTPVMPPIMITR
DLEPGEWTWIASFKPLNKCPSCGICWTNKHSCKEASTSFYWMSIDKTGREMWQHVRFKCA
SSPPNNRNLFVTYDIETYTIFTERGKRMYPFMLCFKLSGDPILVQQAEEIAKQDTSIGTI
NGGYYWIHNDPGVVGRKFRNFRTNLQVYFADDLIFRFFQFNSKPIEALLKEKKLKNPRDL
PFDVYWEHRKKFFVPSEFYQVSIIVIGHNICKFDEILLASEIIEDREIYPKATKCERAFM
PRAGRLLFNDIYFSLPNPSYLDKDPTRTMRWKRARTENNDYMFLSVKFTVRDTCQLTGGA
SLRKAAQAYSLNASKGECPYEAINDFLSTGQYKKDEDGFPQTEYWQNETVMLEQKQLWQA
NHPSQPYDIIHACLEYCMLDVIVTEQLAHTILHNYDVYFKVELGFEGNFNIFERPTIPSN
THALWKQLAFAEYIQEKQSSPLNQLKNIDHRFVAQLYSPHKTMFKYIRQALRGGRCYPTI
LGPFYKPVYVFDICGMYASALTHPLPHGSPLDPKSTAIHVDILNSILQGQETISYFDSRI
KPSILKVEAHPPCITQLDSLPPICSRKGGRLVWTNESLYDEVITVIDIITLHNRGWKVKV
IHDPMNVVFREWKTLCAEYVGKNIRAKEKADKEGNEIMRSISKLLSNALYGAFATNMDTT
KIIFEQDLSQEDMEKIHFGDLEVNHVTVLNDPSFKKQIAFTENAFSSLLLGRDFNSPWSS
AEDEEEEDTRKDQRSLTSSPSLEDIDEELLDLNARPYIPSEEYDHAHFTAASTTRFKPLT
LLEAPSEALTILHVEKQDKMVENNRYATQLACFVLGWSRAFFSEWADIVHGPDRGTHPHE
REPQSLYGDTDSIFLTESGYKRMITRGAHRIKSPSTQLIFDPKNPQLTWACECDIKCKQC
KSDTYSSESIYLAPKLYALKDSHCTKCGFVGQGKLRAKGHPGEELIYDTLMRCWQRSEEE
AITGTSSIPELNTSRTIFKKTLLNKVSKYDPFTLHNERLTRVLRPWKDITLYQHGDYLYP
YNNANPNPRNELPSRQLEDFSGDDPLQPLTGEDCDILLDFIKENDGNQEEALEL
Download sequence
Identical sequences I3PMM6
gi|388570682|ref|YP_006383556.1| YP_006383556.1.10332

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]