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Domain assignment for gi|570364811|ref|YP_008992092.1| from NCBI viral sequences

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|570364811|ref|YP_008992092.1|
Domain Number 1 Region: 3294-3878
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 3.21e-95
Family RNA-dependent RNA-polymerase 0.000000000000531
Further Details:      
 
Domain Number 2 Region: 1826-2118
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 5.6e-37
Family RNA helicase 0.0041
Further Details:      
 
Domain Number 3 Region: 281-393
Classification Level Classification E-value
Superfamily Ribonuclease Rh-like 0.000000432
Family Ribonuclease Rh-like 0.0042
Further Details:      
 
Weak hits

Sequence:  gi|570364811|ref|YP_008992092.1|
Domain Number - Region: 1496-1532
Classification Level Classification E-value
Superfamily NOB1 zinc finger-like 0.0484
Family NOB1 zinc finger-like 0.014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|570364811|ref|YP_008992092.1|
Sequence length 3918
Comment polyprotein [Porcine pestivirus isolate Bungowannah]
Sequence
MNTFTFNTYGGSEEGNMFFRTAPTPPPGCQEPVYTSTMRPIFGEPHPPLHKHSTLKLPHW
RGIKTIRVKKRELPKKGDCSNSTTAPTSGVYVELGAVFYKDYTGTVYHRVPLELCTNQER
CEGSKCVGRMTGSDGRLYNVLVCPDDCILFERHCRGQTVVLKWISNPLTSPLWVQSCSDD
KGAKPKVKPKDDRMKQGKIVTKPKETEADQKTRPPDATIVVDGQKYQVRKKGKAKPKTQD
GLYHNKNKPEASRKKLEKALLAWAILACLLVVPVGSTNVTQWNLWDNKSTTDIHSVMFSR
GIKRSLHGIWPTQICKGIPTHLAADYELKRIHGMVDASPMTNFTCCRLQRHEWNKHGWCN
WYNIEPWINLMNNTQGLLNTGDNFTECAVTCRYDADLGVNIVTQARTTPTILTGCKKGHN
FSFSGEVRASPCNFELTAEDLLRIMDHTNCEGFTYFGEGIVDGYTEVVEKARSSGFRALT
WLSSKIENTKKKIFGAEASPYCPVAKRVFNIIYTNNCTPLGLPDKSKIIGPGTFDISGRD
EFIFPKLPYHVDDFILLSLIAMSDFAPETSSIIYLALHYLMPSNDNRDFVMDLDPNKLNL
TATKSVASVVPTSVNVLGEWVCVKPSWWPYSAEITNLIGGVITVADLVIKTIEELLNLWT
EATAVAFLAALIKIFRGQPIQAVAWLIIIGGAQAQTCNPEFMYALAKNTSIGSLGPESLT
TRWYQLTSGFKLTDSTIEVTCVGANMRIHVVCPLVSDRYLAINHPRALPTTAWFRKIHTQ
HEVPRERIMSESKRRYTCPCGSKPVVRSTTQFNPISISTPSFELECPRGWTGAVECTLVS
PSTLTTETIFTYRKPKPFGLENWCKYTVVEKGILYSCKFGGNSTCIKGLIVKGQREDKVR
YCEWCGYKFSSPNGLPQYPLGLCEKEQSEGLRDYGDFPCCNNGTCIDKEGSVQCYIGDKK
VTVKLYNASLLAPMPCKPIVYNSQGPPAPKTCTYRWASTLENKYYEPRDSYYQQYIIKSG
YQYWFDLTAKDHVADWITKYFPIIIVALLGGRGTLWVLIAYELLTQYEVVGDENIVAQAE
ALVIGNILMSLDLEIISCFLLLLIVVKKQAVRRTLALLFHWITMNPFQSVMITVVYFVGL
VRAEEGTKEGSTSGPPIHVVAILLFLLYHTVKYKDFNIAMILLITLSLKSSSYIHTSLYE
IPLLVAVISLTCSIYIFDLQVKSKLVAPTIGIIGVTLAMRVLWLVRQMTIPTPSVSISLI
DPKMVIILYLISLTITVNHNLDLASYCLKLGPFILSFLTMWVDVVILLLMLPWYELVKVY
YLKKKKEDVETWFQNSGISTQETSPYGFDFSSPGEGVHTLPMQNKTKFCRTAYMTVLRAL
VITAISSVWKPIILAELLIEAVYWTHIKIAKELAGSSRFVARFIASIIELNWAMDEKEAS
RYKRFYLLSSKITDLMVKHKIQNETVKSWFEETEIFGIQKVAMVIRAHSLSLEPNAILCS
VCEEKQNQKAKRPCPKCGSRGTQIKCGLTLAEFEEEHYKKIYILEGQDETPMRKEERQQV
TYVSRGALFLRNLPILASKNKYLLVGNLGMELQDLESMGWIIRGPAVCKKIIHHEKCRPS
IPDKLMAFFGIMPRGVTPRAPTRFPVSLLKIRRGFETGWAYTHPGGVSSVMHVTAGSDIY
VNDSIGRTKIQCQDKNTTTDECEYGVKTDSGCSDGARCYVINPEATNIAGTKGAMVHLRK
AGGEFNCVTAQGTPAFYNLKNLKGWSGLPIFEAATGRVVGRVKAGKNTDNAPTTIMSGTQ
VAKPSECDLESVVRKLETMNRGEFKQVTLATGAGKTTMLPKLLIESIGRHKRVLVLIPLR
AAAEGVYQYMRTKHPSISFNLRIGDLKEGDMATGITYASYGYFCQMDMPRLENAMKEYHY
IFLDEYHCATPEQLAVMSKIHRFGESVRVIAMTATPSGTVSTTGQKFTIEEVVVPEVMKG
EDLADDYIEIAGLKVPKKELEGNVLTFVPTRKMASETAKKLTTQGYNAGYYFSGEDPSSL
RTTTSKSPYIVVATNAIESGVTLPDLDTVIDTGMKCEKRLRIENKAPYIVTGLKRMAITT
GEQAQRKGRVGRVKPGRYLRGPENTAGEKDYHYDLLQAQRYGIQDSINITKSFREMNYDW
ALYEEDPLKIAQLELLNTLLISRDLPVVTKNLMARTTHPEPIQLAYNSLETPVPVAFPKV
KNGEVTDAHETYELMTCRKLEKDPPIYLYATEEEDLVVDILGLKWPDATERAVLEVQDAL
GQITGLSAGETALLIALLGWVGYEALVKRHVPMVTDIYTLEDEKLEDTTHLQFAPDDLNN
SDTIELQDLSNHQIQQILEGGKEYVGQAYQFLRLQAERAANSDKGKKAMAAAPLLAHKFL
EYLQEHAGDIKKYGLWGVHTALYNSIKERLGHETAFASLVIKWIAFSSDGVPGMIKQAAV
DLVVYYIINRPEYQGDKETQNAGRQFVGSLFVSCLAEYTFKNFNKSALEGLIEPALSYLP
YASSALKLFLPTRLESVVILSTTIYRTYLSIRKGSSQGLAGLAVSSAMEIMNQNPISVAI
ALALGVGAIAAHNAIESSEAKRTLLMKVFVKNFLDQAATDELVKENPEKIIMAVFEGIQT
AGNPLRLVYHLYAMFYKGWTAAEIAEKTAGRNIFVLTIFEGLEMLGLDADSKWRNLSSNY
LIDAVKKIIEKMTKTATSFTYSFLKSLLPAPFSCTKSERDPRIGWPQKDYDYLEVRCACG
YNRRAIKRDSGPVLWETLEETGPEYCHNRGERGLSNVKTTRCFVQGEEIPPIALRKGVGE
MLVKGVSFRIDFDKDKILSTDKWKVPHRAVTSIFEDWQGIGYREAYLGTKPDYGGLVPRS
CVTVTKQGLTFLKTARGMAFTTDLTIQNIKMLIATCFKNKVKEGEIPATIEGETWINIPL
VNEDTGTIKPSFGERVIPEPYEEDPLEGPSVIVETGGIAINQIGVNPQSSTCGTVFTAVK
DLCQTVSNKAKNIKIGFSEGQYPGPGVAKKTLNQLIQDEDPKPFIFVCGSDKSMSNRAKT
ARNIKRITTTTPEKFRDLAKNKKLIIVLLGDRYHEDIEKYADFKGTFLTRQTLEALASAK
AVEKDMTKKEAARVLAMEEKDELELPGWLHTDAPKFLDITKDNITHHLIGDMQSLRERAG
EIGAKATTQITKKGSVYTINLSTWWESERLASLEPLFRELLSKCRPVDRETYKNCHFATA
AQLAGGNWVPVAPVVHLGEIPVKKKKTLPYEAYKLLKEMVDSEKEFHKPVSREKHQWILN
KVKTGGDLGLKNLVCPGRVGEPILREKKKFNIYNKRITSTMLSVGIRPEKLPVVRAQTST
KEFHEAIRDKIDKKANTQTPGLHKELLEIFNSICAIPELRNTYKEVDWDVLTSGINRKGA
AGYFEKMNIGEIIDSDKKSVEQLIKRMKSGLEFNYYETAIPKNEKRAVVDDWMEGDYVEE
KRPRVIQYPEAKMRLAITKVMYNWVKQKPIVIPGYEGKTPLFHVFDKVHKEWKNFNSPVA
VSFDTKAWDTQVTPKDLLLISEIQKYYYKKEYHRFIDNLTEKMVEVPVVCEDGNVYIREG
QRGSGQPDTSAGNSMLNVLTMIYAFCKANSIPYSAFHRVAKIHVCGDDGFLITEKSFGEA
FAIKGPQILMEAGKPQKLIGEFGLKLAYKFDDIEFCSHTPIKVRWADNNTSYMPGRDTAT
ILAKMATRLDSSGERGTEGYELAVAFSFLLMYSWNPLVRRICLLVMSTIDTKEASQNNTI
YTFRGDPIGAYTEVIGYRLDQLKQTEFSKLAQLNLSMAILQIYNKNTTKRLIEDCVKLGN
QNKQILVNADRLISKKTGYTYEPTAGHTKIGKHYEEINLLKDTPQKTVYQGTERYVPGPI
RDFILRRLKILEIVGLKF
Download sequence
Identical sequences D2CGF5
YP_008992092.1.21398 gi|570364811|ref|YP_008992092.1|

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