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Domain assignment for gi|9627035|ref|NP_041276.1| from NCBI viral sequences

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|9627035|ref|NP_041276.1|
Domain Number 1 Region: 2303-2761
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 8.4e-130
Family RNA-dependent RNA-polymerase 0.003
Further Details:      
 
Domain Number 2 Region: 1359-1648
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 3.95e-51
Family Tandem AAA-ATPase domain 0.051
Further Details:      
 
Domain Number 3 Region: 2036-2266
Classification Level Classification E-value
Superfamily Trypsin-like serine proteases 4.04e-40
Family Viral proteases 0.000000829
Further Details:      
 
Domain Number 4 Region: 1232-1362
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 2.32e-20
Family RNA helicase 0.07
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|9627035|ref|NP_041276.1|
Sequence length 3068
Comment polyprotein [Pepper mottle virus]
Sequence
MATSVIQFGSFVCNLPKSQPLCTTVHCPKQSMSTNIVRPSDPFAELEKHLEPYLQKRMDA
TIRQTKGGTLVYKHMSEAKRARKLRKKQREEEEVRLFMNAAPYIVSNITIGGGEVPSKME
EVSIKRPLNKTPSRKIKKSLTPVTFRDGHMNKFLRELRDCATRNSMTVHLIGKRKTELAF
KRRASLNAVYATLHHMRGVDRKRDIVLEEWMNDYVLNLSKVSTWGSLFHAESLKRGDSGL
ILNARALRGKFGRCSRGFFIVRGKSDGVVLDARSKLSMATVTHMEQYSTPEAFWSGLEKK
WSVVRKPTAHTCKPTYSVSNCGEVAAIIAQALFPCHKLTCGECSKEICDLTSNECVQELY
KNTSLALERMNNLHPEFQHIVKVLSVVRQLTEASNHGTETFDEIFKMIGSKTQSPFTHLN
KLNEFMLKGNENTSGEWLTARQHLRELVRFQKNRTDNIKKGDLASFRNKLSARAQYNLYL
SCDNQLDKNASFLWGQREYHARRFFLNFFQQIDPSKGYLAYEDRTIPNGSRKLAIGNLIV
PLDLAEFRKRMNGIDTQQPPIGKYCTSQLDGNFVYPCCCTTLDDGQPIRSAVYAPTKKHL
VVGNTGDTKYINLPKGDTEMLYIALDGYCYINIYLAMLVNISEEEAKDFTKKVRDIFMPK
LGKWPTLMDLATTCAQLRIFHPDVHDAELPRILVDHNTQTCHVVDSYGSISTGYHILKAA
TVSQLVLFADDNLESEIKHYRVGGIVENHKVQIDNQPSRCGVSEFHAIRMLIKGIYRPSV
MYELLSEEPYLLVFSILSPSILIAMYNDRAFELAVQIWLEKEQSIPLIATILTNLAAKVS
VATTLVQQLQLIELSADQLLNVTCDGFRVSFAYQSALTLLTRMRDQAKANSELISGGFNE
YDQDLAWTLEKNYQGLLHDQWKELSSLEKFRYYWSSRKRKTRLRSNIKSRSSPVASAISS
LSLKPFMGKVFSHMKAGAVCTKQGTKNFIDARCLGISTYFVGSLMRKFPSAKVLLSSLFV
LGALLNITHAANRIIIDNRISREHAAALELYRKEDTCHELYTALERKLGEKPTWDEYCSY
VAKINPAMLEFIKDSYDEKQVVHQRSTEDLKKVEHIIAFVTLAIMLFDSERSDCVFKTLN
KFKGVVCSLGSGVRHQSLDDFVSTMDEKNFVVDFELNDSVQRKNLTTEITFESWWDEQVA
RGFTIPHYRTEGRFMEFTRATAAKVASDISISSERDFLIRGAVGSGKSTGLPHHLSTYGR
VLLIEPTRPLAENVFKQLSGGPFFLKPTMRMRGNSVFGSSPISVMTSGFALHFFANNITQ
LQEIQFIIIDECHVMDASSMAFRSLIHTYHTNCKVLKVSATPPGREVEFTTQFPVKLVVE
DSLSFKTFVESQGTGSNCDMIQYGNNLLVYVASYNEVDQLSKLLVAREFNVTKVDGRTMK
HGELEIVTRGTKSKPHFVVATNIIENGVTLDIDVVIDFGMKVSPFLDVDNRSVAYNKVSI
SYGERIQRLGRVGRIQKGTALRIGHTEKGLIEIPQMISTEAALYCFAYNLPVMSSGVSTS
MIKNCTIPQVRTMHTFELSPFFMYNFVSHDGTMHPVVHETLKRYKLRDSVIPLSESSIPY
RASSDWITAGDYRRIGVKLDIPDETRIAFHIKTFHRKFTNNLWESVLKYKASAAFPTLRS
SSITKIAYTLSTDLYAIPRTLAVVESLLEDERTKQYQFKSLIDNGCSSMFSVVGISNALR
AKYSKDHTVENINKLETVKAQLKEFHNLNGSGDELNLIKRFESLQFVHHQSKSSLAKALG
LRGVWNKSLIVRDAIIAAGVACGGAWLLYTWFTAKMSEVSHQGRSKTKRIQALKFRKARD
KRAGFEIDNNEDTIEEYFGSAYTKKGKGKGTTVGMGRTNRRFINMYGFEPGQFSYIKFVD
PLTGAQMEENVYADIVDVQEKFGDIRRQMILDDELDRRQTDVHNTIHAYLIKDWSNKALK
VDLTPHNPLRVSDKASAIMKFPEREGELRQTGQAVEVDVCDIPKEVVKHEAKTLMRGLRD
YNPIAQTVCKLTVKSELGETSTYGLGFGGLIIANHHLFKSFNGSLEVKSHHGVFRVPNLM
AISVLPLKGRDMIIIKMPKDFPVFPQRLKFREPASTDRVCLIGSNFQERYISTTVSEISA
THPVPRSTFWKHWISTDDGHCGLPIVSTTDGFILGLHSLANNRNSENYYTAFDSDFEMKI
LRSGENTEWVKNWKYNPDTVLWGPLQLTKGTPSGMFKTTKMIEDLLAFKSESVREQAHTS
SWMLEVLKENLKAIAYMKSQLVTKHVVKGECMMFKQYLQENPRANEFFQPKMWAYGKSML
NKEAYIKDIMKYSKVIDVGVVDCDRHLRKLSLELLYTQIHGFRKCSYITDEEEIFKALNI
TTAVGAMYGGKKKEYFEKFTTEDKAEILRQSCLRLYTGKLGVWEWALKAELRSKEKIEAN
KTRTFTAAPIDTLLGGKVCVDDLNNQFYSKNIECCWTVGMTKFYGGWDKLLTALPAGWIY
CDADGSQFDSSLTPYLINAVLTIRYAFMEDWDIGYKMLQNLYTEIIYTPISTPDGTIVKK
FRGNNSGQPSTVVDNSLMVVLAMHYAFVREGIAFEEIDSICKFFVNGDDLLIAVNPERES
LLDTLSNHFSDLGLNYDFSSRTRNKSELWFMSHCGISVEGTYIPKLEEERIVSILQWDRA
ELPEYRLEAICAAMIESWGYPQLTHEIRRFYSWLIEKNPYADLASEGKAPYISELALKKL
YLNQDVQMMSFRSYLKYFADADEEFECGTYEVRHQSSSRSDTLDAGEEKKKNKEVATVSD
GMGKKEVESTRDSDVNAGTVGTFTIPRIKSITEKMRMPKQKRKGVLNLAHLLEYKPSQVD
ISNTRSTQAQFDNWYCEVMKAYDLQEEAMGTVMNGLMVWCIENGTSPNISGTWTMMDGDE
QVEFPLKPVIENAKPTFRQIMAHFSDVAEAYIEMRNKQEPYMPRYGLVRNLRDMGLARYA
FDFYEVTSRTSTRAREAHIQMKAAALKSAQTRLFGLDGGIGTQGENTERHTTEDVSPDMH
TLLGVREM
Download sequence
Identical sequences Q01500
NP_041276.1.76038 POLG_PEMVC gi|9627035|ref|NP_041276.1|

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