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Domain assignment for ENSPCAP00000001754 from Procavia capensis 76_1

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSPCAP00000001754
Domain Number 1 Region: 35-121
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 1.74e-32
Family SCAN domain 0.000064
Further Details:      
 
Domain Number 2 Region: 299-356
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.15e-24
Family Classic zinc finger, C2H2 0.0035
Further Details:      
 
Domain Number 3 Region: 248-300
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.14e-20
Family Classic zinc finger, C2H2 0.0051
Further Details:      
 
Domain Number 4 Region: 341-393
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.82e-19
Family Classic zinc finger, C2H2 0.0047
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSPCAP00000001754   Gene: ENSPCAG00000001882   Transcript: ENSPCAT00000001865
Sequence length 402
Comment pep:known_by_projection genescaffold:proCap1:GeneScaffold_3451:22271:26275:-1 gene:ENSPCAG00000001882 transcript:ENSPCAT00000001865 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MASTEEQNGLKIVKVEEDPTWDEETYLHESSFSGQEASRQLFRQFCYHETPGPREALSRL
RELCHQWLPEAHTKEEILELLVLEQFLTILPELQGWVREHQPESVEEAVAVVEDLERELS
EAGKQAQDYEHGHSEMLSENVIHLKVKQESTVIQLQSMVTQLKCESFSPYQFQEQXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCE
ECGKASASSYLVQHQRIHTGEKPYECEECGKAFSQRSGLNEHHRSHTGEKYQCKECGKAF
SASNGLIRHRRIHTGERPYQCEECGKAFRLSSYLAQHQRIHTGEKHYQCNECGKAFSQNA
GLFQHLRTHTGEKPYQCNQCGRKFSRLTLLMKHQISHTEERP
Download sequence
Identical sequences ENSPCAP00000001754 ENSPCAP00000001754

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