SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSPCAP00000003885 from Procavia capensis 76_1

Domain architecture


Domain assignment details

(
show help)

No Significant Hits.

Weak hits

Sequence:  ENSPCAP00000003885
Domain Number - Region: 495-521
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00274
Family Plant C2H2 finger (QALGGH zinc finger) 0.035
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSPCAP00000003885   Gene: ENSPCAG00000004099   Transcript: ENSPCAT00000004141
Sequence length 1076
Comment pep:known_by_projection genescaffold:proCap1:GeneScaffold_1997:49855:90815:-1 gene:ENSPCAG00000004099 transcript:ENSPCAT00000004141 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MGDQQLYTNHVAHSSENLFYQQTPLSVHSSLNHNYGNTVTGSGMDAPQASPISPHFPQDT
RDGLGLSVGSKNLDPVDTSRQGGWGGHSGPGSHVQLRGNLANSNMMWGAPTQAEPTDGYQ
YTYSQASEIRTQKLTSGVLHKLDSFTQVFANQNLRIQVNNMAQVLHAQSAVMDGTPDSAL
RQLLSQKPLEPPAPAIPPRYQQVPQQPHPGFTGGLSKPALQVGQHPTQGHLYYDYQQPLA
QMPVQAGQPLQTPQMLSQQMQQHQYYPQQQQQAGQQRMSVQEMQQQQQQQIHPLQPQQQL
QLQQRGAMQIPQYYQSQPMMQHLQQQQQLHLQPPSYHDPHQYTPEQAHAVQLIQLGSMPQ
YYYQEPQQPYGHPLYQQSHLPQHQQREDSQPKTFPTDRQAQALLNSYGNLAPPDTGIGDP
VSSDLNRVSGALPHRPLLSPSGIHLNSMGPQHQQLSPSAVWPQMHLPDGRTQPGSPESSG
QAKGVFGEQFDAKNKLTCSICLKEFKSLPALNGHMRSHGGMRASLSLKQEEGEKAPPPQP
QPQPQPPPPPQPPPQLPPEADSLTPMVMPVSVPVKLLLPKPSSQGCANSIIATPPARDKP
ASSVSDDEMPVLEIPKKHQPSVAKAEEPPKPVQEKKKFRHRPEPLFIPPPPSYSLNPASS
YSGATLYQSQLRSPRILGDHLLLDPTHELPPYTPPPMLSPVRQGSGLFSHVLISGHGPGV
HPQLPLTPLTPTPRVLLCRSNSIDGSSVTVTPGPGEQTVDVEPRINIGLRFQAEIPELQD
ISALAQDTHKATLVWKPWPELENHDLQERVENLLNLCCSSALPGGGTNSEFALHSLFEAK
GDVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV
KSKTVAQCVEYYYTWKKIMRLGRKHRTRLTEIIDDCVXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFSSRQALNGHARI
HGGTNQVAKARAAVPSGKQKPGGAQSGYCSVKSSPSHSTTSGETDPTTIFPCKECG
Download sequence
Identical sequences ENSPCAP00000003885 ENSPCAP00000003885

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]