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Domain assignment for ENSPCAP00000005984 from Procavia capensis 76_1

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSPCAP00000005984
Domain Number 1 Region: 35-126
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 8.24e-28
Family SCAN domain 0.0000339
Further Details:      
 
Domain Number 2 Region: 348-405
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.52e-20
Family Classic zinc finger, C2H2 0.0068
Further Details:      
 
Domain Number 3 Region: 612-662
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 7.08e-17
Family Classic zinc finger, C2H2 0.0088
Further Details:      
 
Domain Number 4 Region: 555-612
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.09e-16
Family Classic zinc finger, C2H2 0.025
Further Details:      
 
Domain Number 5 Region: 501-554
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 1.14e-16
Family Classic zinc finger, C2H2 0.0071
Further Details:      
 
Domain Number 6 Region: 390-442
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.00000000000000142
Family Classic zinc finger, C2H2 0.0078
Further Details:      
 
Domain Number 7 Region: 653-704
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.000000000138
Family Classic zinc finger, C2H2 0.011
Further Details:      
 
Weak hits

Sequence:  ENSPCAP00000005984
Domain Number - Region: 469-514
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.0105
Family Classic zinc finger, C2H2 0.0055
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSPCAP00000005984   Gene: ENSPCAG00000006401   Transcript: ENSPCAT00000006400
Sequence length 711
Comment pep:known_by_projection scaffold:proCap1:scaffold_7228:35883:48537:1 gene:ENSPCAG00000006401 transcript:ENSPCAT00000006400 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MRPDTLESLDSTPLEDEGPIMEKLKDSEESEAALWDPSLEATRLHFQHFQYLEVAGPHEA
LAQLRELCCQWLWPEVHSKEQMLELLVLEFLGVLPPEIQACVHRQLPSSPEEAVALVKGM
HQEQGSPRRWVTVQVQGQEVLSEKMEPSNFQPQTPEPVPEISPGAMQESPLGLQVKEEPE
VTEDSVLLESKPLTAAKNAMPALLPEQSQDCETPLGQASPPSVTMHEGPSWKEHLGALWQ
EEARDISLRFAYKDGVPVTVSPHLHVAWDLGVPSLQGQISPSPEDDLTHTFVLPSDPGDE
QKPGGEDPSRNAGTLPTTTGWWVPSGRDRGRPSTSTVQGYCCNVCGKVFSQRSNLLRQQK
IHTGERPFICSECSRSFSRSSHLLRHQLTHTTEKQFVCSDCGQVFVRSGRLVEHRRAHAG
EQPFHCMECGQSFRQRSNLLQHQSIHRAPPRPSTTPPMQPSAPEPSGLFPCSCCLQHATL
LEHQAVHTSDKAFGVECGKGFGRLSVLLQHRHVHSGGRPFACTECGQSFRQRSNFTQHRR
IHTEEQPFTCAECSAFRQRPALTQHLRVHTDKKPSACLEYGQRFSQRLKLTRHQWTHTAE
KPYHCSKCGLGFTQVSWLAEHQRIYTGEPSLVCPECGRNFRQQANLMQHQRIHTGEQPYT
CECSKASRLRPTLTQHLRTHLLEKPFACQDCGRCFHHSTRLIQHQHVHNVE
Download sequence
Identical sequences ENSPCAP00000005984 ENSPCAP00000005984

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