SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSPCAP00000010669 from Procavia capensis 76_1

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSPCAP00000010669
Domain Number 1 Region: 531-569
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 0.0000179
Family Canonical RBD 0.00052
Further Details:      
 
Weak hits

Sequence:  ENSPCAP00000010669
Domain Number - Region: 287-319
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.000255
Family Classic zinc finger, C2H2 0.041
Further Details:      
 
Domain Number - Region: 843-875
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 0.0905
Family HkH motif-containing C2H2 finger 0.033
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSPCAP00000010669   Gene: ENSPCAG00000011427   Transcript: ENSPCAT00000011423
Sequence length 875
Comment pep:known_by_projection genescaffold:proCap1:GeneScaffold_174:61641:77042:1 gene:ENSPCAG00000011427 transcript:ENSPCAT00000011423 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MSKSFQQSSLGRDSQGHGRDLSAAGIGLLAAATQSLSMPASLGRMNQGTARLASLMNLGM
SSSLNQQGALSSASTSSHNLQSIFNIGSRGPLPLSSQHRGDTDQASNILASFGLSARDLD
ELSRYPEDKITPENLPQILLQLKRRRTEEGPTLSYGRDGRSATRDPSYRVPRDDWEEKRH
FRRDSFDDRGPSLNPVLDYDHGSRSQESGYYDRMDYEDDRLRDGERCRDDSFFGETSHNY
HKFDSEYERMGRGPGPLQERSLFEKKRGAPPSSNIEDFHGLLPKGYPHLCSICDLPVHSN
KEWSQHINGASHSRRCQLLLEIYPEWNPDNDTGHTMGDAFMLQQSTNPAPGILGPPPPSF
HLGGPAVGPRGNLGAGNGNLQGSRHMQKGRVETSRVVHIMDFQRGKNLRYQLLQLVEPFG
VISNHLILNKINEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFIEMETRE
DAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLVLRIPNRGIDLLKKDKSRKRSYSPDGKE
SPSDKKSKTDGSQKTEGAAEGKDQEEKSGEDGEKDTKDDQTEQEPNMLLESEDELLVDEE
EAAALLESGSSVGDETDLANLGDVASDGKKEASDKAVKKDPSASGAKKKLKKRRFPGSME
GFVTLDEVGDEEDSELQKLRKSGMAFKTGDKNDDGLVEIKVDKMEELDQESEAALENGIK
NEENTETGAESAENADDPNKDASENADGQSDENKEDYTIPDEYRIGPYQPNVPVGIDYVI
PKTGFYCKLCSLFYTNEDVAKNTHCSSLPHYQKLK
Download sequence
Identical sequences ENSPCAP00000010669 ENSPCAP00000010669

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]