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Domain assignment for ENSPCAP00000014346 from Procavia capensis 76_1

Domain architecture


Domain assignment details

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Strong hits

Sequence:  ENSPCAP00000014346
Domain Number 1 Region: 44-136
Classification Level Classification E-value
Superfamily Retrovirus capsid dimerization domain-like 9.61e-38
Family SCAN domain 0.0000517
Further Details:      
 
Domain Number 2 Region: 331-383
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 2.3e-18
Family Classic zinc finger, C2H2 0.0037
Further Details:      
 
Domain Number 3 Region: 293-346
Classification Level Classification E-value
Superfamily beta-beta-alpha zinc fingers 6.8e-17
Family Classic zinc finger, C2H2 0.0077
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSPCAP00000014346   Gene: ENSPCAG00000015393   Transcript: ENSPCAT00000015345
Sequence length 393
Comment pep:novel scaffold:proCap1:scaffold_106498:99:4379:1 gene:ENSPCAG00000015393 transcript:ENSPCAT00000015345 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MNTDLNEVLLLHIQAPEVGEGLLKEKMEAESLQRQESRLKHNNPLAVEIFRRRFRQLCYQ
ETPGPREALIRLRELCCQWLRPHVSTKEQILELLVLEQFLTILPEELQGWMREHCPESGE
EAVTLLEDLERELDQPQQEMVAHRHRQEDPFKERVSMEKHTSLSLQSQPKEPQFTWKSTH
EPHTFGKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGLFNHR
GIHNIQKRYHCKECGKAFSQSAGLIQHQRIHKGEKPYHCNQCDKSYSRRSFLIEHQRSHT
GERPHQCNECGKSFNRHCNLIRHQKIHTLTELV
Download sequence
Identical sequences ENSPCAP00000014346 ENSPCAP00000014346

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