SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for GSVIVT01004942001 from Vitis vinifera

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  GSVIVT01004942001
Domain Number 1 Region: 105-245
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 3.66e-40
Family B3 DNA binding domain 0.0034
Further Details:      
 
Domain Number 2 Region: 636-715
Classification Level Classification E-value
Superfamily CAD & PB1 domains 0.0000000000373
Family PB1 domain 0.031
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) GSVIVT01004942001
Sequence length 767
Sequence
MDFVDSEDALYKELWHACAGPLVTVPRVGERVFYFPQGHLEQVEASTNQVADQQMPAYDL
RAKILCRVINVHLKAESDTDEVFAQVTLLPEPKQDENSAEKEDVLTPTPRPRVHSFCKTL
TASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHL
LQSGWSLFVSSKKLVAGDAFIFLRGENGELRVGVRRAMRQLSNGPSSVISSHSMHLGVLA
TAWHAVSTGTIFTVYYKPRTSPAEFIIPFDQYMEAVKNHYSIGMRFKMKFEGEEAPEQRF
TGTVIGTEDADPMRWPGSKWRCLKVRWDETSSVPRPECVSPWNIEVALTPPSLNPLPVSR
SKRPRANMMSSSTESSVLTREGLSKVTIDHSPGSGFSRALQGQEISTLRGIFMENNNDLV
TTQKSIVQPRSQVVDQMDSASTKRSFMSEDWVPQLRQGVQCANLISGPQSMMHSSTVLNM
ESNVKLSEGAKGKPYPTPANVRYSGFSGYGGLHDLGAEQCPGNWLLPLLPHSYSETTPHL
MGLKPQPLYVQEEVVKSKGDGNCKLFGISLISKPAANPMHRPQGEIQLTMENPARHPEQS
KSSKYMEIGGFEHEKPFQALEQQLSRDDQSKLHSGSTRSCIKVHKQGIAVGRSVDLTKFN
GYTELISELDQIFEFNGELISLNKDWLIVFTDDEGDMMLVGDDPWPEFCSMVRKIFVYTR
EEIQRMDPRPLNPKSWRHPSAVSLWGRASLPELTMEHLFVTSGCEGS
Download sequence
Identical sequences GSVIVT01004942001

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]