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Domain assignment for CJA02082 from Caenorhabditis japonica

Domain architecture


Domain assignment details

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Strong hits

Sequence:  CJA02082
Domain Number 1 Region: 465-647
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 1.89e-47
Family Reverse transcriptase 0.0013
Further Details:      
 
Domain Number 2 Region: 324-416
Classification Level Classification E-value
Superfamily Acid proteases 0.00000000000000563
Family Retroviral protease (retropepsin) 0.0094
Further Details:      
 
Domain Number 3 Region: 645-721
Classification Level Classification E-value
Superfamily Ribonuclease H-like 0.000000000425
Family Retroviral integrase, catalytic domain 0.016
Further Details:      
 
Domain Number 4 Region: 253-299
Classification Level Classification E-value
Superfamily Retrovirus zinc finger-like domains 0.0000384
Family Retrovirus zinc finger-like domains 0.0025
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) GBrowse: CJA02082   Protein: JA36359   Gene: WBGene00121286
Sequence length 879
Comment JA36359 WBGene00121286 status:Predicted
Sequence
MPRDITTGDQELAMADLTKQISTLVAALSKLTQVGTASEQHSTDTTKLADAISSRIPMFV
YEPEDGRTFDTWYSRYKDTITKDGFSLQDDVRTRLVISKLDTKQYSHYANRILPKVPSEL
SYEDTIAKLKETFKETSSIYQRRQNFLRTEYHGSSIEEYTGTVLRRFASSDFKSMTDDQL
CCMVWINGLRDPAHIDIRTRALQTMESRPDVTLLQLESEIKRLLDLRADSKCVAGSTPSH
AAEINAIFRKQQRDNNREHGPPSACYRCGGPHWARDCNVKDVKCSKCGKTNHMAKFCRFQ
DKTKPHQKKKVKSVIISLASSSGASRIYRKVFINSKPLRMQLDTGADITLINTKDWAKIG
KPKLDKPSIKVKSATGQPINVKGSFTCDFTINGNSATGTAHVADTDTLLGIDWISKDTQL
WNLLQDNHQINAAFSVIGSACNYLDNTREKLKFDLKSEYPIIFQPGLGKCTKTKASIRLK
PGAQPVFRKARPVPYATLPTITEELDRFVQEGIATPIDHAQWAAPVVPIRKKNGSLRMCA
DFSTGLNDAIESHQHPLPTADDIFATLNGGKHFSQIDLAEAYFQIELDEDSKNLMCINTH
RGLFQFNRLPFGVKPATAIFQQVMDSMISGIEGAAAYLDDIIISGGTHIRSPPFHPQSNG
QAERFVDTMKRALRKLQGEGNADTAIQVFLQNYRSTPCEASPHYLSPAENFIGRKIRTTL
DLLLPSSESPTARNDSMEAQFNRHHGARERMFQEHDKVYVKDFRNPQNATWISGVVQKRI
GRTLYKVLVNGSVWKRHTNQPRRRDIAPFAGSTNIWYLDVVTPPRADNSNQLPSTTQPTP
ASPTSPRLIAPTQPTIRTSTRHRNPVKKLDIDPRTKSYK
Download sequence
Identical sequences 281687.CJA02082 CJA02082

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