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Domain assignment for CJA07678 from Caenorhabditis japonica

Domain architecture


Domain assignment details

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Strong hits

Sequence:  CJA07678
Domain Number 1 Region: 373-538
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 4.14e-37
Family G proteins 0.00018
Further Details:      
 
Domain Number 2 Region: 150-221
Classification Level Classification E-value
Superfamily B-box zinc-binding domain 0.000000000103
Family B-box zinc-binding domain 0.0032
Further Details:      
 
Domain Number 3 Region: 3-79
Classification Level Classification E-value
Superfamily RING/U-box 0.000000106
Family RING finger domain, C3HC4 0.027
Further Details:      
 
Weak hits

Sequence:  CJA07678
Domain Number - Region: 206-270
Classification Level Classification E-value
Superfamily Spectrin repeat 0.046
Family Spectrin repeat 0.014
Further Details:      
 
Domain Number - Region: 105-140
Classification Level Classification E-value
Superfamily Cysteine-rich domain 0.0795
Family TFIIH p44 subunit cysteine-rich domain 0.053
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) GBrowse: CJA07678   Protein: JA33053   Gene: WBGene00126882
Sequence length 550
Comment JA33053 WBGene00126882 locus:Cjp-arc-1 status:Predicted
Sequence
MNEYGCNVCNEEYSARDPLKCPRVLTGCGHTICHSCATSIAGRGSSIFCPFDRASTPIPG
GEIKNLKKNFALLELLEKIADESVGNIDRSEASLLPRDRYSKERLLNLDCDENSEHVAVL
YCTVCDSNLCERCSETTHSTNVLSKHRRIPLTEKPPPLVHCRLHSSYVVEFVCKEESCDN
ESPLMCLMCRDYGRHKGHNHVLIEKEVEDLREKVREHLTELSRQSEVVDEALGSINQAIH
DLSPGEESGTLEETRQEVRNHFRRLRSALDRDEADAVETLDEHARERVDILRSAKDRLEA
ASTKIGATCHTLQKALIMEKGKILDRSDDLLALAESTAAEKTTIPDSSQLSTRIAFSFAN
DRKLHIGDFIDSRVVLLGLDGAGKTSIVRRLKKVRIDAVMAPHPTIGFNIETIHYKNYRL
TFWDVGGLPKFRHLWKHYYTNTQAVIFVIDGHAVERFSESIKELRKVMSDPLVGPCPVIV
AINRKEWVLFWVFYNGSSLNGPMDALLSQLDALPFQHHFHFCDAATGSGIDHVLDQITVC
LSRLNGTCPV
Download sequence
Identical sequences 281687.CJA07678 CJA07678

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