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  Home > Genomes > Caenorhabditis japonica > CJA12330

Domain assignment for CJA12330 from Caenorhabditis japonica

Domain architecture

Domain assignment details

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Strong hits

Sequence:  CJA12330
Domain Number 1 Region: 269-423
Classification Level Classification E-value
Superfamily Spectrin repeat 1.38e-29
Family Spectrin repeat 0.00075
Further Details:      
 
Domain Number 2 Region: 1208-1342
Classification Level Classification E-value
Superfamily Spectrin repeat 2.04e-29
Family Spectrin repeat 0.00058
Further Details:      
 
Domain Number 3 Region: 817-957
Classification Level Classification E-value
Superfamily Spectrin repeat 6.96e-29
Family Spectrin repeat 0.0003
Further Details:      
 
Domain Number 4 Region: 1504-1659
Classification Level Classification E-value
Superfamily Spectrin repeat 5.37e-27
Family Spectrin repeat 0.00031
Further Details:      
 
Domain Number 5 Region: 717-850
Classification Level Classification E-value
Superfamily Spectrin repeat 7.72e-27
Family Spectrin repeat 0.00019
Further Details:      
 
Domain Number 6 Region: 378-525
Classification Level Classification E-value
Superfamily Spectrin repeat 2.49e-26
Family Spectrin repeat 0.0012
Further Details:      
 
Domain Number 7 Region: 1932-2083
Classification Level Classification E-value
Superfamily Spectrin repeat 3.66e-26
Family Spectrin repeat 0.00073
Further Details:      
 
Domain Number 8 Region: 1403-1538
Classification Level Classification E-value
Superfamily Spectrin repeat 1.51e-25
Family Spectrin repeat 0.00013
Further Details:      
 
Domain Number 9 Region: 1828-1961
Classification Level Classification E-value
Superfamily Spectrin repeat 2.74e-25
Family Spectrin repeat 0.00023
Further Details:      
 
Domain Number 10 Region: 533-636
Classification Level Classification E-value
Superfamily Spectrin repeat 1.96e-22
Family Spectrin repeat 0.00024
Further Details:      
 
Domain Number 11 Region: 1100-1236
Classification Level Classification E-value
Superfamily Spectrin repeat 8.47e-22
Family Spectrin repeat 0.002
Further Details:      
 
Domain Number 12 Region: 2090-2203
Classification Level Classification E-value
Superfamily Spectrin repeat 1.83e-21
Family Spectrin repeat 0.00021
Further Details:      
 
Domain Number 13 Region: 1630-1734
Classification Level Classification E-value
Superfamily Spectrin repeat 1.83e-20
Family Spectrin repeat 0.00013
Further Details:      
 
Domain Number 14 Region: 601-714
Classification Level Classification E-value
Superfamily Spectrin repeat 5.63e-20
Family Spectrin repeat 0.00025
Further Details:      
 
Domain Number 15 Region: 1035-1103
Classification Level Classification E-value
Superfamily SH3-domain 9.32e-20
Family SH3-domain 0.00011
Further Details:      
 
Domain Number 16 Region: 1734-1835
Classification Level Classification E-value
Superfamily Spectrin repeat 3.67e-18
Family Spectrin repeat 0.00011
Further Details:      
 
Domain Number 17 Region: 958-1033
Classification Level Classification E-value
Superfamily Spectrin repeat 0.00000000000000142
Family Spectrin repeat 0.0015
Further Details:      
 
Domain Number 18 Region: 2297-2369
Classification Level Classification E-value
Superfamily EF-hand 0.00000000000347
Family EF-hand modules in multidomain proteins 0.019
Further Details:      
 
Domain Number 19 Region: 22-91
Classification Level Classification E-value
Superfamily Spectrin repeat 0.00000000127
Family Spectrin repeat 0.00045
Further Details:      
 
Domain Number 20 Region: 127-218
Classification Level Classification E-value
Superfamily Spectrin repeat 0.000000209
Family Spectrin repeat 0.004
Further Details:      
 
Domain Number 21 Region: 2206-2287
Classification Level Classification E-value
Superfamily Spectrin repeat 0.00000196
Family Spectrin repeat 0.0014
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) GBrowse: CJA12330   Protein: JA33896   Gene: WBGene00131534
Sequence length 2370
Comment JA33896 WBGene00131534 status:Predicted
Sequence 
MSDSNDAHDPPEPEIQILDTVHNIQQRRQEVLGHYSVFKSHSETKRERLEEARQFQYFKR
DADELNAWILEKLQTAQDENFRDPSNLQSEILSKNAKITPEHVQKISDQNIDFFFENFQH
RYFGLKLSAKIQKHAAFEAEVNAHATAIANLDDAGNAMIHYENFASDIIKVFLFVARLSL
LFIIFQKRLAELHALWKKLLFKLKDKGIKLQQALDLLHFTRQCDEILYWIREKETNVIAD
DISLDLEHVVILQQQFNDFSKELGNQRYRIDEINQAADSLVAKRHAEHEQIQKKRDDVNE
AWHHLNTLFATHKEGLFGAQQVQRFNRDADETLVWIGEKNFALSTDDYGRDLNSVQFLER
KHEGIERDLAALGGKMLQLEKEAAKLVETHPERADAIHQKNNDVLTAWNALKEKAQQRKS
GLENSFQLYRFLDDYRDLISWARDMKAVIEADELAKDVAGAEDLLGSHQEHKGEIEARED
SFSQTIIAGQKLIDMGMTDSSDIPEKLEELEHEKSSLLALWEQRHVIYQQCMDLQLFYRD
TEQAESWMDKQEAFLANTDLGDSLDSVEHLVKKHKDFEKSLTAQEVKINALDEFATNLIL
QHYAADEIATRRQALIDRRARILETSLQREKSLADSYRLQTFHRKCDEVVGWITEKLSIA
REESHLDPNNMRGKLQKHINFEQELKANENRLDDIGSTGEKLIESGHFATENVESFQIKD
RLRQMNSLWNDLVEAVKEKGIMLHAAKNEQEFNRIIEEVDTWLSDVEAQVASEDYGNDLV
SVQNLQKKIGLLESDINAHSDRLDGIKSIANQFESEEHFNASAVVRRQEDLQQRYNALRE
PLELRKRTLGESLQGNQLFRDIEDELTWIREKEQVTESINRVHDLIGVQNLIKKQEALIA
EIENHDDQVDSVSSTANEMIEQSHFLAPQIREQLAKLCDNWKMLRTKAEKRREVLEDSLQ
AHQYLSDANEADAWMNEKEPIIGSTDYGKDEDSAEALLKKNRALLSDLEAFKTTIEDLRK
QASQCKYQKEPERQFGRDSVLALYDYRDKSAREVSMKKGDVLHLLNDNNKDWWKVETNGR
QGFVPSAYVKRIEPGTVIQQANWIDQTQSEIEIKYEHLIELGETRNRKLDEACKGYQLLR
EVNDLSEWIKSREAFVVQQEVETDLEHVEVLQKKFDDFKEDLKANEARLQEMNQIATALT
SVGQPGAAIRIRQQIEHLNIRWRTLEEQTEQREHQLGSAQEVQRFHRDADETRDWIREKD
DALDSTDLGRDLRSVQALQRKHEGVERDLAAVEGKIKSLDDKANRLRQSHPEAAEQIYDR
QRELSEQWNHLIVKVNNRKENLYNSYDYQHFLSDYRDVMQWIASMDQLVFSQELADDVTG
AEALLEQHQEYRTEIDSRATTFQAFEQFGNQLINSNHYAVADIEDRLQSVETARKGLEDA
WVARRYVLEQCLDLQLFYKDCDQADAWISAREALLDQEDPSANSFESLIKKHKEFDKAMS
TQEDKIEGLTRFAEVLIKNNHYDAEAISIKGNEILERWIKLKEAFNQKRSKLGESQTLHQ
LSGDVDEIETWITEKFEIAQEENYRDTVNIQLNHQKQQAFEAEINANSERIAAIIQAANK
LIEKAKGTEDEPAISARLETISYQWSRLIEITTEKSYRLTEANKQNNFMEGIKELEFWLD
EIENRLQSDDYGKDLASVENLLKKHSLLEAEIIGHQDRVVEMNEQADSLLENDPQVDGRR
NLIADRYDDCKKMSADRRDKLSKARNVHRFFRDIDDEELWIKEKKLLVTSDDYGRDLPGV
QNLRRKHRRIDTELASHEPQISLIKLKGEELLRSADEAGIGQDQIKKRMEDLENGWKQIR
DLAGSRHHRLDESEAFQAFLEDVEEEEAWMNEKQQILRSGNFGDHVTGVQGLLKKHDTFQ
VDLELHKHRVVDLIKEGDALIHNGNHHAPHIKQRSDQLRARLVEIENMAEKRLAKLRDNS
AYLQYMWKCDMVESWIAEKEQHVRFQDFGRDLSSVQSLLTRHEAFEAGLNVFEQEGIKRI
SELKDQLVSSAHQQSKTIENRHTNVIQRWNNLLAHSETRLQNLLKMMKKFKQIEELHLSF
SQKASTFNSWLENAEEDLTDPVRCNSLEEILALCDAHEQFHRSLSSAEEEILQLQDLDRR
ITSFNVGPNPFTWFTMDAFEDAWRHLLKIVKEREMELAKELQRQKENDKLRHEFATLANA
FHTWLTNTRQEMMEAGGTLEEQLGAVEMKAREINGNKTQLRKIEEMGALLERNLILDNRD
VYVTLQEYMSFMISKETENIQSSEEIEMAFRALSKEFRPYVTTEELYANFTPEQAEFCMK
RMQPSTDTISSRTVQGGLHYEHFVHTLFQK
Download sequence
Identical sequences CJA12330 281687.CJA12330

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.