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  Home > Genomes > Caenorhabditis japonica > CJA13040

Domain assignment for CJA13040 from Caenorhabditis japonica

Domain architecture

Domain assignment details

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Strong hits

Sequence:  CJA13040
Domain Number 1 Region: 116-268
Classification Level Classification E-value
Superfamily Spectrin repeat 3.53e-35
Family Spectrin repeat 0.00092
Further Details:      
 
Domain Number 2 Region: 749-905
Classification Level Classification E-value
Superfamily Spectrin repeat 1.68e-34
Family Spectrin repeat 0.00024
Further Details:      
 
Domain Number 3 Region: 644-797
Classification Level Classification E-value
Superfamily Spectrin repeat 3.01e-33
Family Spectrin repeat 0.0002
Further Details:      
 
Domain Number 4 Region: 538-691
Classification Level Classification E-value
Superfamily Spectrin repeat 2.03e-32
Family Spectrin repeat 0.0000811
Further Details:      
 
Domain Number 5 Region: 221-375
Classification Level Classification E-value
Superfamily Spectrin repeat 6.41e-32
Family Spectrin repeat 0.00064
Further Details:      
 
Domain Number 6 Region: 1466-1622
Classification Level Classification E-value
Superfamily Spectrin repeat 1.96e-31
Family Spectrin repeat 0.00017
Further Details:      
 
Domain Number 7 Region: 1365-1514
Classification Level Classification E-value
Superfamily Spectrin repeat 3.27e-31
Family Spectrin repeat 0.0000301
Further Details:      
 
Domain Number 8 Region: 1256-1393
Classification Level Classification E-value
Superfamily Spectrin repeat 1.05e-29
Family Spectrin repeat 0.0015
Further Details:      
 
Domain Number 9 Region: 1571-1727
Classification Level Classification E-value
Superfamily Spectrin repeat 2.4e-29
Family Spectrin repeat 0.0000366
Further Details:      
 
Domain Number 10 Region: 339-477
Classification Level Classification E-value
Superfamily Spectrin repeat 3.4e-28
Family Spectrin repeat 0.0011
Further Details:      
 
Domain Number 11 Region: 1895-2049
Classification Level Classification E-value
Superfamily Spectrin repeat 3.53e-28
Family Spectrin repeat 0.0008
Further Details:      
 
Domain Number 12 Region: 1170-1293
Classification Level Classification E-value
Superfamily Spectrin repeat 6.67e-28
Family Spectrin repeat 0.00068
Further Details:      
 
Domain Number 13 Region: 29-156
Classification Level Classification E-value
Superfamily Spectrin repeat 2.43e-26
Family Spectrin repeat 0.0000565
Further Details:      
 
Domain Number 14 Region: 1794-1927
Classification Level Classification E-value
Superfamily Spectrin repeat 7.55e-26
Family Spectrin repeat 0.00017
Further Details:      
 
Domain Number 15 Region: 2055-2169
Classification Level Classification E-value
Superfamily Spectrin repeat 8.9e-24
Family Spectrin repeat 0.0002
Further Details:      
 
Domain Number 16 Region: 1061-1198
Classification Level Classification E-value
Superfamily Spectrin repeat 1.07e-23
Family Spectrin repeat 0.0013
Further Details:      
 
Domain Number 17 Region: 909-972,1054-1094
Classification Level Classification E-value
Superfamily Spectrin repeat 2.99e-20
Family Spectrin repeat 0.0012
Further Details:      
 
Domain Number 18 Region: 982-1049
Classification Level Classification E-value
Superfamily SH3-domain 4.59e-20
Family SH3-domain 0.0000615
Further Details:      
 
Domain Number 19 Region: 2279-2454
Classification Level Classification E-value
Superfamily EF-hand 8.8e-19
Family Calmodulin-like 0.012
Further Details:      
 
Domain Number 20 Region: 2171-2282
Classification Level Classification E-value
Superfamily Spectrin repeat 1.83e-16
Family Spectrin repeat 0.00073
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) GBrowse: CJA13040   Protein: JA38577   Gene: WBGene00132244
Sequence length 2456
Comment JA38577 WBGene00132244 status:Partially_confirmed
Sequence 
MADSNDTHAPPEPVLEVPPPQEIRILETADDIQQRRQEVLGHYSLFKDHSKTKRDRLEEA
RQFQYFKRDADELNVWILEKLQTAQEENFRDPSNLQAKIQKHEAFEAEVQAHAKTIANLD
KTGNAMIQHNHFASDIIRKRLEELHALWDKLFFKLKDKGIKLQQALKLLHFIRQCDEVLY
WIREKETYVTAEDMGMDLEHVEILQRKFDDFLKELGNHQYRINEINQAADKLVEEGHSEH
DQIYKKRDDVNEAWHRLNTLAATRKEGLFGAHQVQRFNRDADETLAWIGEKDLALSSDDY
GRDLNNVQALQRKHEGTERDLAALEGKMLQLEKEAVKLAETHPDRADAIHQKNDDTKAAW
NALRDKAQQRKDGLEKSFQLHRFLADYRDLISWIGDMKAVIGADELAKDVAGAEALLESH
QEHKGEIDAREDSFNQTASAGQKLVEMGIPESPEVRDKLEELAHEKATLLGLWEERRILY
EQCMDLQLFYRDTEQAETWMNKQEAFLANTDLGDSLDSVEHLIKKHEDFEKSLAAQEEKI
NALDEFATKLIQGQHYAADDVAKRRQALLDRRRRLLDRARQRGNSLKESYKRQTFDRDCD
EMVSWITEKLSTARDDSYLDPTNIRGKLQKHINFEQELKANENRLDDIRSTGEQIIDSGH
FASDHIGDRLRQVNSLWNELVDATNKKGAKLREAGNEQQFNRNIEDVELWLSELEGQVAS
EDYGKDLVSVQNLQKKIGLLESDFNAHNDRVDGIKNLAQQFESEEHFNAPVIVRKQEALH
QRYNALRDPLEKRKRKLGESLQGNQLFRDIEDELAWIREKEQVAGSTNRGRDLIGVQNLI
KKQQALIAEIANHDSQIESVSNAANDMIQQGHFLAPEIRDKLAQLRDNWRILKSKAEKRR
GELDDSLQAHQYLSDANEADAWMSEKEPIVGSTDYGKDEDSAEALLKKHRALLSDLEAFK
GTIEDLRKQASQCKYQEQPMGQLGRDCVLALYDYQEKSPREVSMKKGDVLTLLNASNKDW
WKVEVNDRQGFVPAAYVKRIEPGTAQQHNKENNLRDKNIKFQVNSIGGKQSEIEDKYQRL
MMLGETRKRKLEEACKGYQLLREANDLAEWIKSREAVAAQQEIGTDLEQVEVLQKKFDDF
KGDLKANEVRLQEMNQIATALTSVGQTETAVRIRQQIEDLNARWRALEEQTEQREQQLGS
AHEVQRFHRDVDETRDWIQEKDDALDSEDFGRDLRSVQALQRKHEGVERDLAALGDKIKS
LDEKANRLRQSHPEAAEQIYDLQRELNEQWNRLTSKANNRKEKLLDSYDYQRFLSDYRDL
QQWIASMNQLVSSQELANDVTGAEALLERHQEYRTEIDSRAATFQAFDQFGNQLLNSHHY
AAADIENRLQGVNAARKGLEDAWVARRNILDQCLELQLFYRDCEQADTWMSAREAFLAQE
DPSGDNVESLIKKHEDFDKAINTQEEKIKGLKQFAESLIKNNHYDAPAVARKRDQILDRW
NGLKDALIQKRSKLGESQTLQQFSRDADEIENWMTEKFQIAQEENYRDPTNIQQKHQKQQ
AFEAELHANSDRIAAIIQAGNNLIENAKCGGGEAAVSARLKALNDQWDLLVKTTTEKSYR
LKEANKQKSFMAAVKDLEFWLGEVEILLQSDDYGKDLASVENLLKKHSLLEADITAHQDR
VGEMNEQADSLLENDQFQGQQIAERRKLIADRYDGVKKMATDRRDKLSKALNVHQFFRDI
DDEESWIKEKKLLVSSDDYGRDLPGVQNLRRKHRRIDTELASHEPQVSLVKLKGEELLRS
AAEAGVGEDQIKKRMEDLESSWGQIRDLTGSRHKRLDESEAFQAFLGDVEEEEAWMNEKQ
QILGSDNFGDNMAGVQGLLKKHDTFQVDLELHKQRVADLINKGDTLIHNGNHHAPHIRQR
CDQLRARLVEIESMAEKRLAKLRDNSAYLQFMWKCDVVESWIAEKEQQVRSEDFGRDLSS
VQILLTKQEAFDAGLNAFEHEGIQRITELKDQLVSSAHLQSPAIEKRHTNVIQRWQNLLA
HSEGRRQKLLKMQQQFKQIEELYLAFAKKASTFNSWFENAEEDLTDPVRCNSLEEIRALR
DAHAEFQRSLSSAEEDFRQLQDLDRRIKSFNVGPNPYTWFTMDALEDTWRNLQRIIKERE
QELAKEHQRQEENDKLRREFAKLANAFHTWLTNTRQEVGMMEAGGSLEEQLDAVKRKTSE
IKANKTQLRQIEEKGALLERNLILDNRYTEHSTVGIAQAWDQLDQLAMRMQHNLEQQIQA
RNQSGVTEEALREFSMMFKHFDKEKSGRLDHQQFKSCLRALGYDLPMVDEGQPEPEFQRI
LDIVDPNRYVQLALVKIKFMFFFSRDGYVTLQEYMAFMISKETENIQSSEEIEMAFRALS
KEFRPYVTAEELYANLTPEQAEFCIKRMKPYSDAISGRSIQGGLDYEQFVHALFQS
Download sequence
Identical sequences 281687.CJA13040 CJA13040

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.