SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for CJA17383 from Caenorhabditis japonica

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  CJA17383
Domain Number 1 Region: 54-144
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 6.56e-29
Family Reverse transcriptase 0.0017
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) GBrowse: CJA17383   Protein: JA28183   Gene: WBGene00136587
Sequence length 1112
Comment JA28183 WBGene00136587 status:Predicted
Sequence
MASTDGSCDAKSDTTTPILVQSLENDDAVREAARDHELWNQLEKEEPLESVIRKVIRKSK
SSWASIIVLVKKKDGTVRMCIDYRKVNKVIKNNAHPLPHVESTLQSLSGKKVFLTLDMIS
GYWQLPLEESSKEVTAFAVGNVYMNLMYSLLGCPLFHINLDQRRITKKKIYPPSTRVLRS
QAKKGTSTAEPEKSPASSRPVKEEEKAAKERENTSTANLSELFGRLLRLTGNPEETVRFD
SNSPDCSSSPSQIQSPTHISHDLTPYSSAQFSPLQFSQIPQDQFHLNKPNQSSSNSSTSV
TPHQSPLATSPVKTDFSQFSSPLLSPEKSHILETAAVLKESPVKTVVRNLVESIKTRTRP
TSPTDSNSSHSTVKMTGERKNEYGKDIVDCEDEDFDYEGTRVMADNNVIWRNTGDIIRLV
EKRIKPFSRGKAADLARWLNDLARLFFFIRVKSRHGASLLPFFLNNPALRKYNSISSEKR
RNWATVIDALMELHENSADKELALQELSLLKQGDLSVSDFAEKIADLGTYAYDDIKEDAR
ERILVSRFAAGLNKDIRTEFRQLPTKPKTLRESTTHAERIQQLLELEAEEEESAIVAALQ
YQPQFQNQRGAFNGRGSYRGRANYPNRRYYNNFNQGFPNEFNQGFPTGFNQGFPNGFNQG
FPNNFNQGFPNEFHHGNGQFGYNQTYMQQQQQQQQQQIQPGQQQTRQVQQRQLMLENGQQ
PQGNGRTGRPSMNSVSTFLLGLLMMFSLFQSGSSFQICGFGLTGNLFVPPSPISCVFTSE
IYLQRHKVNVFAPKSNVMKLPATKCSKTEVNTITTNYLSIYKSTEIKIGNQIEVSADECR
KVSLEKSFNGKKLDEISPGYFSTNITENLETNNTNWMGSNEAIMYSFTIQLGRVATIDGI
RECDFEYSYATQAITDLHHIAIEDAGIFSRIDRDLRQLNKIKDDCHLNEALLTDDGLLIE
FPDHFHRRPEQSGFFQEQTFWIRKKREISGILGAHGERVEFDIGQNFSTPLIWKLEDIRA
QSEVRDPLLVIKKKKLGWAGHIMRRNDGRWTRLVQEWYPLGEKRPVGRPRMRWCDSLQKE
ISLFDGKNLETHWSTIAKDRMAWKAVIRDHIR
Download sequence
Identical sequences 281687.CJA17383 CJA17383

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]