SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for CJA17676 from Caenorhabditis japonica

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  CJA17676
Domain Number 1 Region: 255-672
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 1.89e-126
Family Reverse transcriptase 0.0000519
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) GBrowse: CJA17676   Protein: JA34212   Gene: WBGene00136879
Sequence length 697
Comment JA34212 WBGene00136879 status:Predicted
Sequence
MSTTFHRQHYRPIFPSAGPQERRCVGFQLHQCKDARGYIARASNARDRAEDFMQPKQKRS
GLGGNEVLMAGAAFAKIRIGTKSWIHRIHFTTGECTPHGARDYHIILGNDFLSQLPRFFI
DYQAETLHVGEEIIPIGKNHVEYTPKVLDIRVSEDTIVPAQSERVLACQEPMSTDMCDTL
FLVTSQNLVNRSLLTAPVLINNKNVRILVTNPTDCDIFLAKNTKAAEAVEEDPKFRISLD
KAVCTEAQKHVLLNLFAEFHDVFSKNAYDLGSSKTDSVHIYTNTEIPVRGRPYRVPVKYQ
AELQKHINGLLLSERITESNTPWISPIVLVPKKNGSLRVCLNFRKLNEVTVPDNFPLPRI
DSIIEKVGGSKYFSSLDMANGYLQLRLDDESSYKCGFTTEEKVYAYTHLPFGLKSAASYF
QRALRTVLAGLENDVLVYIDDVLVFSKTFESHVQTLKKVLSRFRAYNLKASPAKCEFVKK
SIAFLGHEINECNYSPNEANLHTIKQLPVPTDAKGVLRFLGMAGFFRKFIKKFSNIAEPL
TRLNKKDVPFEWTSQQQEAFDTLKQLLASKPILTFPNYDKEFHIFTDASAVAQGAMLAQT
TDDPNQFQAIAYASRTLSDTETRHFKPYVYMSKVILHTDHRPLKYILAKQKVHERVARWL
IELQQFDIEIKHIDGKRNTVADCLSRAKDEVTPLPEE
Download sequence
Identical sequences CJA17676 281687.CJA17676

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]