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Domain assignment for CJA08828 from Caenorhabditis japonica

Domain architecture


Domain assignment details

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Strong hits

Sequence:  CJA08828
Domain Number 1 Region: 480-913
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 3.22e-133
Family Reverse transcriptase 0.0000494
Further Details:      
 
Domain Number 2 Region: 1104-1258
Classification Level Classification E-value
Superfamily Ribonuclease H-like 1.64e-38
Family Retroviral integrase, catalytic domain 0.0098
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) GBrowse: CJA08828   Protein: JA29420   Gene: WBGene00128032
Sequence length 1614
Comment JA29420 WBGene00128032 status:Predicted
Sequence
MTPIWRMDTCLPRFAGPTVVNSTHLLALKNAAVVDFNNIATRMKESEERTAMEMRALAEQ
VDRRTTNIVSLERLVDQLRSRVIVLEEQAQGFALVGESVVSRSSTEHSGVRAPVVESGKD
LTVPDRSVEPSNPTDSVQNATSAAENSLAEEHEEARESQAPHIPRVCVLGFKSTTSIGTY
SGAFSESLSLFVRQFKDQMKAADAEASETAQVYAFLTFLVGNARDRAEEFLDGNANATVD
QLVADLKATFENELTGKLKEAQFAKCRQERGESIEMYFNRVRILAAQAFRCENKQMIEKK
ARDAFLNGLEDTIRYNVKDKDPKTCKQALDEAIRQEILREDRLASQQYAPTVALLDEMRS
FKNDWFNAQSKPRMQNNRDGSRRVKFRHIARDCMKRKAGLPKVVQTNDEAVRNHQIQQRP
AHVKAAVTEDLQSQLEIAKQRVFDNVNAVNTASVTEDPKFKISLDKAVCSEDQKEVLLKL
FSEFHDVFSKNAYDLGSSKTDPVHIYTNTEVPVRGRPYRVPVKYQAELEKHINGLLLSER
ITESNTPWISPIVLVPKKNGSLRVCLDFRKLNEVTVPDNFPLPRIDSIVEKVGGSKFFSS
LDMANGYLQLRLDAESSYKCGFTTEEKVYAYTHLPFGLKSAASYFQRALKTVLAGLEKDV
MLYIDDVLIFSKTFVEHVATLRKVLTRFREFNLKASPAKCEFVKKSIVFLGHEIGEDSYS
PNQANLDAIQQMPVPKDLKAVLRFVGMAGFFRKFIKNFSEIAEPLTKLNKKEQPFEWRVE
QQQAFDKLKELLTSKPILIYPDYEREFHIFTDASAVAQGAMLAQTTEDLDRFHVVAYASR
TLSEIETRRPAIQIELGAIIFALRHFKPYVCLSKIILHTDHRPLVYLLAKRKVNERLARW
LIELQQYDISIVHIDGKKNTVADCLSRAKDEVAPLPDEELEDVIEFPVCMAIDRANDRVS
KHFTPVGTRKPINIASEQNEDEDIRIITTFLTSPAASIEGISEEWTPFLERVSLSDKGIL
TVKFGGENTKVVIPKKLRKLVWESFHSSLLGGGHFNWRKSLHKAQKKYFWPGMRSEFLKW
TLECIKCQQKQNPHPSKRELQQVVITSHVFETVGVDLTGPLRTSTKGNKYYINMICWFSK
FVVSVPLPDATCESIARAILEELVLKFGTPNQIVSDNATSFTSAAFKQFCELLDISHHRA
IPYHSKGNGATERTFRTFHSMIAKHVNKSHTDWDTLLPYVTFNYNNTVHSTTGETPFFLI
FGRDPTLTIDRILDPSPKSVKTDLRLFKESLTTTLRDAWNEAAIRSREAQAVYQKKANEG
AQGSIIKAGDRVMYKDYSNHKGLSRKLVLPWAGDFRVVEVNPPTATIYDRRDSRKPERIV
HLDQIKKISSSEEDIDTPATEVDAVANDGENPEVEDRREEVIRNPEPTVQTTSKTLSNQT
ETSSDIAPVRRNPQRQRKLPTKESLHNDAPGMRGMKPQIRSPRKPKQFIKKKSQRRSTRL
NHKGWRQKVNPPTATIYDRRDSRKPERIVHLDQIKKISSSEEDIDTPVTEVDAVANDGEN
PEVEDQQEEVIRNPEPTVQTTSKTLSNQTKTSRDIAPVRRNPQRQRKLPAKFKT
Download sequence
Identical sequences 281687.CJA08828 CJA08828

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