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Domain assignment for CJA16885 from Caenorhabditis japonica

Domain architecture


Domain assignment details

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Strong hits

Sequence:  CJA16885
Domain Number 1 Region: 1-356
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 6.34e-120
Family Reverse transcriptase 0.0000373
Further Details:      
 
Domain Number 2 Region: 540-701
Classification Level Classification E-value
Superfamily Ribonuclease H-like 1.97e-36
Family Retroviral integrase, catalytic domain 0.012
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) GBrowse: CJA16885   Protein: JA37855   Gene: WBGene00136090
Sequence length 1010
Comment JA37855 WBGene00136090 status:Predicted
Sequence
MCIDYRKVNKVVKNNAHPLPHIEATLQSLSGKKIFTTLDLLAGYWQIPLKEASKQITAFA
IGSELFEWNVLPFGLVTSPAIFQATMEAIVGDLLGKNVFVYVDDLLIASETLEQHVEDLR
TILTRIKNSGMMLRASKCHIAQREVEYLGHKITPEGVQTEEKKVERMRKFSRPTNAKELH
SFLGLVGYYRNFIMNFSKIAAPLTPLTSPKTAWKWEEEQEMAFQQLINKICEAPVLIQPD
VEAALNGDKPFLIYTDASKQGIGAVLAQEGKDGKQHPIAFSSKSLSPAEKRYHITDLEAL
AMMSALRRFKTIIYGTPVVVFTDHKPLMYLLKGTPLADRLLRWSIEILEFNVKIVYLKGK
ANEVADALSRGGCSPVESEDTETTELNMIVNEIRGEKSDDVLDNSNWFEWLKEEDEGWNE
IIDKLENGEEKCRVKVLGMKGEVPVDHYALIGKSLRNTEIEGTCRFVVPKRARAALLQEA
HEGVLAGHFGTEKMVRQLSRRFFWPKMRASIQSCVKACAKCLCTNDAPKLVAPLTPYDTT
YPLEVVACDLIDVGLSVQGNRYILTILDLFTKYGTAVPIPDKTSETVLKAFNERWALGEG
RIPHTLLTDQGKEFDNGMFQQFTRMLKIRHEMTKGYNSRANGAVERFNKTLMHIVKKKTA
VAMEWDDQVVFAVYAYNNVAHTTTGETPTYLMYGRDSRGPLEMDGEDAVGINYADMDEYK
HLLTHELLKTQKIVKEHAMGEHEKYKRLFDEKHRTATRKYPEPGSRVLVEIPAEKLGAKC
PKLINKWKGPFRVLECSNNSATLTPVLGKGKDVICVPFDHLRVVPDEMGDEEIKTKKGRA
KKKVAHLEGDFCDEVSMRDPNETFFRHIFSCRCSRPCVFYPPSATTARTTSPSQLVAMMN
LLELKPELAQKPTELLLLAQANLPFEVDIPSQEALLAMAHCPTLQLMCREEPAWNVAFTH
TFSALMRKFFGEDFTSQPVNTLLVLAPGVRESTVTLAFTEKLGSEERGVS
Download sequence
Identical sequences 281687.CJA16885 CJA16885

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