SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|374296990|ref|YP_005047181.1| from Clostridium clariflavum DSM 19732

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|374296990|ref|YP_005047181.1|
Domain Number 1 Region: 1577-1710
Classification Level Classification E-value
Superfamily Hedgehog/intein (Hint) domain 1.57e-25
Family Intein (protein splicing domain) 0.062
Further Details:      
 
Weak hits

Sequence:  gi|374296990|ref|YP_005047181.1|
Domain Number - Region: 12-180
Classification Level Classification E-value
Superfamily YWTD domain 0.0115
Family YWTD domain 0.045
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|374296990|ref|YP_005047181.1|
Sequence length 1858
Comment RHS repeat-associated core domain-containing protein [Clostridium clariflavum DSM 19732]
Sequence
MCHSCAGLFDAYIVTSDDMSKYVFDVSTKRLIRLEDRVGNALRIIYDSKGQIDYVIDDVG
RKLDFTFNANGKVESIEDPLTNRSVKYNYSNGLLTKVIDSELKETTYEYDSNDRIVKVID
ANNNTAVKIDYDVFGRIVRQYDAEGNVTYQVYSDATNERYIIDARGNESRVRFNLDMRVV
EEVDALGNKVVYEYSYYDPGSNKWEVIPDVDIRTLEDNKDPNTKAYTKYLEAGKDKRLKI
KETMYDKRGNATTNEYDENNNLVGTVDPLKQTTSMVYDPVYKHNLISKTDKKGNTTTYVY
DNEGKYGPKGALLVKEIDPLGNELIYDYYTNESGIKIKGLVKTVTEKKRVDQKDPNSELI
EFKVTEYKYDDLYNNRTQIIDTLGNSTYEEYDAAGRLQKVTNARGYTTKYTYDKNDRIIV
EEIFPQTNERKILKRTESIYDNVGNKTFVIEERFAADRPDYPKEDLVTETVYDRNNRPVQ
IYDAEGYRVSYTYDEAGNKVTETDKRGFTTIYKYDELNRVTEVIDPLNNTTTYEYDANGN
VIKITDAKNRVTFIDYDELDRKWKERIQYNEDGEEKEAVYEYLYDENDNPYREIDPNGKI
IEYEYDALNRITKEVDGLGLKDKNGNSMEKIVTYSYNYESVVEDGKTVKYEVMTEKDYLT
STKIRPIVIKNDALGRMRIKIETNNGDKTIQEYDEVGNLKSVKDARGNVTSYEYDGLNNI
IKVIDATRINYSEAVFDSVGNVIEKIDRRNNKTEYRYNKLNQVIKTTTWYTDENGVKQEV
VSAILYDEAGNKKIATDAEMNSTIFEYDELGRLVAETNPMYNTRYYGYDAVGNQVWVTDW
KEHDSSESNVHPIINSKGETVYRLKTTYEYDDFDRLKTVISTEGEITSYTYDVIGNIKTV
TVDGVRKNTYSYDKMYRLEKMLDGEDRAETYDEYDLFGRLLQKTDRNGQVHIYTYDEYDN
VEIHTVTRKVKENGVEKVVKDVRETYYDALGNVVRTVDETGETIYNYNELNLLDNKVLPD
GKTVEYEYDEEGNIKEIKDPSGNVTTYLFDEMNRMKTVTTKDGTTTYAYTKNGNRKSLKL
PNNVLTTYEYDARNVLIKLVNQVGSSVDIYEYEYDENSLQTAKIEPKGKTSFEYDNLGRI
KTVVEPGGRTTTYAYDGAGNRKEQTVEDALNDVSSKLTYHYDRSNRLTDVLEVRNGSNIT
TVYTYDGNGNQIKVAATEPGDVINVSEYTFDGFNQLKVAKTQDSTSTSKYDAFGLRVEKT
VDGVTTKYYYDGQSILLEVRSDGLESHNIQGVNLIARKIKGDSDTLYYLYNGHADVVKLV
DGAANTVNEYDYDIFGNILYQLESKPNPYKYSGYYYDDDTGYYYLRSRYYDPKIARFISE
DTYTGEYNDPLSLNLYTYCQNDPITYDDPNGHWLHIAAGALIGGLVNTAITAVSDFMEDG
KFNKSWREYAGSFAEGAITGAIGAATGGASFIAAAAASAAGSVVGNAVGQYISKGKVDVK
EALFAGATDLVTMGAGKLAGNLTKKGMNKFAKTAVGENVLKKANSVKSKVLNKISGVKTK
VQSIVKRECKHPELGMCFTADTLVYTKDGHKRIEDIKVGDQVYSVNVDTGEKGLKTVKQL
FVNETYELIHIYVGYSQIKSTAPHPFWVEGKGWVEAGNLLEGDKVKLYSGEVLEIKEIRR
ERLEEPVKTYNFEVEDWHTYLVSENNVLVHNAGSKKCPLKFSFKSNKSNAGNNNVKSKLR
DSRTINFSQKSIDSKFSDGTNIKDTIYRLKNDPSYAEKMEPIRIVKYKDLPADVQQKLAS
QNVGKHTVFTLDNRRLYAARKAKVKVNTRWATPEEIQNFATVKRFTTINGGKMPEVRW
Download sequence
Identical sequences G8M298
gi|374296990|ref|YP_005047181.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]