SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|374298359|ref|YP_005048550.1| from Clostridium clariflavum DSM 19732

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|374298359|ref|YP_005048550.1|
Domain Number 1 Region: 684-720,774-857
Classification Level Classification E-value
Superfamily TPR-like 0.0000000129
Family Tetratricopeptide repeat (TPR) 0.023
Further Details:      
 
Weak hits

Sequence:  gi|374298359|ref|YP_005048550.1|
Domain Number - Region: 359-454
Classification Level Classification E-value
Superfamily Galactose-binding domain-like 0.0019
Family CBM4/9 0.013
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|374298359|ref|YP_005048550.1|
Sequence length 1027
Comment putative membrane protein, required for N-linked glycosylation [Clostridium clariflavum DSM 19732]
Sequence
MGDKKYLDIFKKLLFIGLLFVIFYTPYLRGLYFESEQVVTEIIVFSIFILFWIYKWLKRD
RSFIKTPVEYAAIGLVLAYFLTIFTAVNPRLAVTEFLKYAMYFMVFLMISDFIKNERERE
YLLWTIVASAFGVCVIGIDSAAGSKIVDLLNSIFGVLNINISFFGLFVDGRIHSTMQYPN
AFAAYLLAVFFISVSLMMTSKKWVKSIASAISFILFTTFIFTISRGAYILLVLAIPFFLL
LLPKGSKARGLYCVLTIGIISGAFSIILARFITQSSANKGIIWPLVIIGVVVSFFVRFTD
DFAISCINRINLKVTIICSAVLVVIAAVASVNVLSASVPLQLEHSINEKEGFRGKTSIIK
LEGNKKYKLVFKVDAKSENKNPFVYRVVLQTRNKAGITSGNEPILVNKQYDATNGLEEKE
IVFTVPEDKEMINLSFQTYYGGTKVLIDDAKIYDYESGKEVKKLVLKYKYSFVESVVSRF
SNITSDISYNSRIIFIKDGFKIFKDWWLIGAGGGAWRLLNFKYQSFLYWSTETHNYPLQV
LVETGLIGIIILMLLFASIAFTFAKLCRKGEFEKDNGYISNVAVFTAIIFLIAHSVMDFD
FSLSSIFLLAWQLVAVLNSGVRHYDLSVEYGLNKNNKQKIIKNNKLLNTNIKTLFYREIN
CYPLIMILVSIAILFWPIKFLRGQAYANDAFENFKENNLDKALLLMEKAVNTDNLNAKYV
TGYMPIASKPDVRIGYLDLLISKAETVSKSSESNGNGEDKLALNSYISKAKELIKRVERQ
ANYDADLALNLGIFYLKTTDKDKGIEYINKSVGLKPLVPTQWQYKANALYSLAMNFYQKG
DIKNGLAYIDKILAIIDEAKKVNEQNLSPFMFTIETQKYLEKAYCIKNGIMDTDDIVFQS
VFGMDIDNNNFADQLGVSDIAIVGNYLSEGIFRVSNQDQNLDPYIYTRTLDFEPNNVYKI
EVKLANRENVESVPFLIPGVTNKIGQLVLNGDIYSAEVSVVATSEINRLYIYVKDNYDIE
SIRVIKK
Download sequence
Identical sequences G8LUH8
gi|374298359|ref|YP_005048550.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]