SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for CRE26447 from Caenorhabditis remanei

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  CRE26447
Domain Number 1 Region: 136-184
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 0.0000292
Family Eukaryotic type KH-domain (KH-domain type I) 0.005
Further Details:      
 
Weak hits

Sequence:  CRE26447
Domain Number - Region: 270-316
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 0.000599
Family Eukaryotic type KH-domain (KH-domain type I) 0.009
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) GBrowse: CRE26447   Protein: RP35623   Gene: WBGene00054272
Sequence length 970
Comment RP35623 WBGene00054272 locus:Cre-gld-3 status:Partially_confirmed
Sequence
MGEQSKEGEADEPASFDPFVRSEVEYDSTTRLHMAEDVASTRRLFVSPALKDIIVNPENF
YHGCQQSAKMAEDANQRRQVSFNTKREAFIHQLRANGLPLPSKIPMIEINPTRVTLSLEF
EAQYYSLMTNDYGNHENVASIMQQTNTLIQFPDRSESSHDPFVQQITITGHYSDVDKARK
LMRDNCHVSIIMSLQDLKVSQSELQAFAEQNPIQNVDMFFLTSSSEKNGEALPHLRFTSR
TKNEHELIQAANMILKKAYGNELQRKHPLIEQRTNVRISYPGYNTKEDIRGNLFTITING
TVENVLEARKYLMDLLPVSICFNMANTDMAAQSELADRCIHVLIEESRIMFKMTPSVYEP
SELLSDEVPLHWASLRSKEFNIKHMYTAYQKVLAKKIEVVAPQPTDYDKSIWHRCLPQGF
LFFLLLCRGESSDSSASHRRHRSTSVTSSQSKQGFPKGKSSSDVPIVPTRSQPRVSSVSE
CISMYSPPICKNYVYCFIAQPYHPMQMFTDPITHSQLTQMIMMQQQQAHALMKGSPLLQP
VPFAYPIVFDQGTGAPICFPYHPIDPNFFQYPGIPISEGFDRSTNRQETSTSGHQTNSNK
KPTRMMNRPSSGGSHHYSSSTHRPRRGYEQIRDDDARSSTRSGSRRTSTSGDEPTVGSYE
DRGFDRQFSRHNQRYSKDDNMRWKTGSRGDINARRNQNFQKDFRPASTSRDYDFHVGSAG
STDRHASTDQLQFQSTHHLKLKPNEVDLDQERLFTHDSPQVDERAYPQSGFGSGLVDGDF
VQKFISNVNVNDPKKRSRAVSCFIERDDQIARLTDSDCAYSVTDQTITQPSRSIDSFKKL
PGAGVTKTMLEPRSRNEKEYAKINLEHKDKFTGEPIDEDKYTDMGPSFGSRQYRIDPMKL
IASVRESSEQLPRIHERQFNDVLNDKERELAASAFKERNMETNLVQERSLDDTSPLDYAF
RNDQSTDNIR
Download sequence
Identical sequences E3LQK3
31234.CRE26447 XP_003113840.1.11157 CRE26447

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]