SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|385777995|ref|YP_005687160.1| from Clostridium thermocellum DSM 1313

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|385777995|ref|YP_005687160.1|
Domain Number 1 Region: 204-364
Classification Level Classification E-value
Superfamily Carbohydrate-binding domain 1.17e-54
Family Cellulose-binding domain family III 0.00000708
Further Details:      
 
Domain Number 2 Region: 33-194
Classification Level Classification E-value
Superfamily Carbohydrate-binding domain 9.27e-53
Family Cellulose-binding domain family III 0.00000655
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|385777995|ref|YP_005687160.1|
Sequence length 688
Comment cellulosome anchoring protein cohesin subunit [Clostridium thermocellum DSM 1313]
Sequence
MKKNNVLTIAAMIALLLTSLLTSITFGETSSIPSRISMELDKTKANIGDIIIATIRIDNI
NNFSGYQLNIKYDPSYLQAVNPLTGEPIKKRTMPAVNGTVLLKGDQYSITEVVENNVDEG
ILNFGKGYANLTEYRKSGKPETTGIIGKIGFKALKLGKTEIKFENTPVMPGAKEGTLLFD
WDAETITEYNVIQPKELAITLPDDAHIALELDKTKVKVGDVIVATVKAKNMTSMAGIQVN
IKYDPEVLQAIDPATGKPFTKETLLVDPELLSNREYNPLLTAVNDINSGIINYASCYVYW
DSYRESGVSESTGIIGKVGFKVLKAANTTVKLEETRFTPNSIDGTLVIDWYGQQIVGYKV
IQPDKITVISEPEVPTQTPTQTPPTTTAPSQTPTQTPPTTTAPSQTPTQTPAVTPTQSAT
PSDPGGGGGGLPGGGGGAVNPSASPTPTPTSKPTPTATKKPEPTEIEEPEPEIPGTVGIH
YSYLTGYPDKMFRPEKSITRAEAAVIFAKLLGANENTKINYNVSYTDVDSSHWASWAIKF
VSYKKLFTGYPDGSFKPNQNITRAEFSTVVFKLLVSEKGLKEEKIEKSKFGDTKGHWAQQ
FIEQLSDLGYINGYPDGTFKPNNNIKRSESVALINRAMGRGPLHGAPQVFEDVPQTHWAF
KDIAEGVLNHRYKLDNEGKEQLLEIIDN
Download sequence
Identical sequences Q06853
WP_003519375.1.19387 WP_003519375.1.20586 WP_003519375.1.31213 WP_003519375.1.55520 WP_003519375.1.6636 WP_003519375.1.6965 gi|125975558|ref|YP_001039468.1| gi|385777995|ref|YP_005687160.1| 203119.Cthe_3079

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]