SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|62739353|gb|AAH94169| from Xenopus laevis

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|62739353|gb|AAH94169|
Domain Number 1 Region: 1224-1290
Classification Level Classification E-value
Superfamily SAM/Pointed domain 3.29e-19
Family SAM (sterile alpha motif) domain 0.00025
Further Details:      
 
Domain Number 2 Region: 50-149
Classification Level Classification E-value
Superfamily PDZ domain-like 6.12e-19
Family PDZ domain 0.0000331
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|62739353|gb|AAH94169|
Sequence length 1292
Comment Shank2 protein [Xenopus laevis]
Sequence
MVTPRLQTMAESSKFKKKVHFGETRSDRTKKLFRHYTVGSYDSFDASSDCIIEEKTVVLQ
KKDNEGFGFVLRGAKADTPIEEFNPTPAFPALQYLESVDEDGVAWQAGLRTGDFLTEVNN
ENVVKVGHRQVVNMIRHGGNHLVLKVVTVTRNLDPDDTARKKAPPPPKRAPTTALSLRSK
SMTSELEELAVDIASVRRRKDVQVSDVECLKRRIVIRVALNKSEESGPISKPLRPLDNTP
VNSRVATVKQRPTSRCFPAASDTNSMYDRQGIAVIPPTTPGSHQGPFLGIPRGTMRRQKS
IDSRIPLSGITEEERQFLAPPMLKFTRSLSMPDASEDIPPPPATLPPSPPPPSPSSFNSP
KSPAPRGYGTIKPAFTQNSGTKSPSPAVRSDNVGTIARDKSMYFRHEANRFSLDSEELYN
SNMSTQQNFINKRSKMPENPYSEVGRLGNKGVYVPAKPVRRKGMLVKQSNVEDSPEKTCS
IPIPTIIIKEPSTSSSGKSSQGSSMETDLQISEQVGQLRPDESLNVSGPFAAAIAGAVRD
REKRLEARRNSPAFLSTDLGDECVGPKPSPRLQHSKSIDDGMFCSEEKAKHFMAPSSLII
NRGSSNAFTNNDSSHQGDVSNARMSKIKGPENNAAPAKSTNASGNYMHPVTGKLLDPNSP
LALALAARDRALKEQNQPSPSPTDPEKADLNKPLFIDTKLRSGMETINANRPNMRGMLKR
QETESKHEPDSSKEEKRQGEKKNMLINIMDTSQQKTAGLLMVHTVDTTKADNVLTESEEA
EKDPPPENSNSPVSEPREELENSIPKASECGTPAAPHIKAIVSVCSVEEPVILPFRIPPP
PFASVDVDEDFVFTEPLPPPLEFANSFDIPEDASQIPPASLADLLIQRKNRAFPPPSFNP
NIASNSIESKRLAALSNCLPTSFMQHPESFDNVTDSGIEEVDSRSGSDHHLETTSTISTV
SSISTLSSEGGENLDTCTVYADGQAFLVDKPPVPPKPKVKPIINKSNALYKDAVLEENLD
NFAVPLPAPPPLPLSIQPSMTKAGQQRTSKLWGDNTEVKSLVMPSPKANVISELNSILQQ
MNREKATKTGEGLDSPTGMKTASLSTRGTDALSTVSGNRNAAVTFTIRPGANQPISLQNR
TPEFDSRVTGMRRAPSPVVVSPAEIIRDIKPGPLSAPPASMSDVFILPSQPPSGDMFGMS
MGRSRSPSPSILQQPISNKPFSAKPIHMWTKQDVAEWLESLHLGEHREMFMDNEIDGTHL
PNLQKEDLIDLGVTRVGHRMNIERALKQLLDR
Download sequence
Identical sequences Q52KW0
gi|148229142|ref|NP_001089408| gi|62739353|gb|AAH94169| gi|82192972|sp|Q52KW0| NP_001089408.1.7800

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]