SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain assignment for gi|148227800|ref|NP_001079111| from Xenopus laevis

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|148227800|ref|NP_001079111|
Domain Number 1 Region: 397-659
Classification Level Classification E-value
Superfamily YWTD domain 1.18e-53
Family YWTD domain 0.0000000029
Further Details:      
 
Domain Number 2 Region: 312-390,660-711
Classification Level Classification E-value
Superfamily Growth factor receptor domain 0.0000000000494
Family Growth factor receptor domain 0.019
Further Details:      
 
Domain Number 3 Region: 26-63
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000000864
Family LDL receptor-like module 0.0002
Further Details:      
 
Domain Number 4 Region: 141-183
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000131
Family LDL receptor-like module 0.00059
Further Details:      
 
Domain Number 5 Region: 62-105
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000209
Family LDL receptor-like module 0.00039
Further Details:      
 
Domain Number 6 Region: 232-269
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.000000000681
Family LDL receptor-like module 0.00018
Further Details:      
 
Domain Number 7 Region: 107-144
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000484
Family LDL receptor-like module 0.00054
Further Details:      
 
Domain Number 8 Region: 193-230
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.0000000327
Family LDL receptor-like module 0.00051
Further Details:      
 
Domain Number 9 Region: 273-308
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000327
Family LDL receptor-like module 0.00037
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|148227800|ref|NP_001079111|
Sequence length 892
Comment low-density lipoprotein receptor 2 precursor [Xenopus laevis]
Sequence
MMKPAVSFPLLLLGLCHVSAFSGIGKCDRNEFQCGDGKCIPYKWICDGSAECKDGSDESS
ETCRALTCGADQFSCGGRLNRCIPMSWKCDGQTDCENGSDENDCTRKVCADDQFTCRSGK
CISLDFVCDQDQDCDDGSDESYCPAPTCNPAMFQCKDKGICIPKLWACDGDRDCEDGSDE
DHCEGREPIKTDKPCAPLEFHCGSGECIHMSWKCDAGYDCKHKSDDKDCVKPTCRPDQFQ
CNDGTCIHGSRQCDREYDCKDLSDEEGCVNVTKCQGPDVFKCRSGECITMDKVCHKKRDC
RDWTDEPIKECGENECLRNNGGCSHICNDLKIGYECLCNEGYRLVDQKRCEDINECENPN
TCTQICINLHGGYKCECREGYQMDPVTASCKSIGTVAYLFFTNRHEVRKMTLDRSEYTSF
IPRLKNVVALDMEIASNKIYWSDLTQRKIYSASMDKADNTSHHETVISNQIQAPDGIAVD
WIHGNIYWTDSKFSTISVANTEGSKRKTLFTDDLAKPRDIVVDPSQGFMYWTDWGLPAKI
EKGGLNGVDRYPLVTDNIEWPNGITLDLISQRLYWVDSKLHSLSCIDITGENRRTVLSDE
THLAHPFGLTIFEDLVFWTDIENEAIFSAKRLTGENIMKVAEHLLSPEDIVLYHNLRQPK
AENWCESHHLGNGGCGYLCLPAPHVNARSPKFTCACPDGMHLGTDMRNCMKEPVTQEATT
STTTSAPVTTTSTARPSSRITTLAKIASTTSTLAPQRPKMVSTTVPPRRPTTNSPKTTLR
MNTEKVPAHTTQEPMTHSQLARNKFAEAGVVESARSHPTALYIVLPILILCLVSFGGFLL
WKNWRLKNTNSINFDNPVYQKTTEEDQVHICRSQDGYTYPSRQMVSLEDHIA
Download sequence
Identical sequences Q99088
NP_001079111.1.7800 gi|148227800|ref|NP_001079111| gi|214578|gb|AAA49898| gi|547839|sp|Q99088|

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