SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSXETP00000048449 from Xenopus tropicalis 76_4.2

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSXETP00000048449
Domain Number 1 Region: 104-266
Classification Level Classification E-value
Superfamily C-type lectin-like 3.71e-19
Family C-type lectin domain 0.0054
Further Details:      
 
Domain Number 2 Region: 25-67
Classification Level Classification E-value
Superfamily LDL receptor-like module 0.00000000000484
Family LDL receptor-like module 0.0011
Further Details:      
 
Weak hits

Sequence:  ENSXETP00000048449
Domain Number - Region: 265-330
Classification Level Classification E-value
Superfamily FnI-like domain 0.000314
Family VWC domain 0.021
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSXETP00000048449   Gene: ENSXETG00000022386   Transcript: ENSXETT00000048449
Sequence length 551
Comment pep:known scaffold:JGI_4.2:GL172648.1:4028636:4052117:1 gene:ENSXETG00000022386 transcript:ENSXETT00000048449 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MVPKPDSGTFLLLFLLVLTLTEPLRPELRCTPGQFACHSGTIQCIPLHWQCDGWPACEDE
SDEVNCPGLSGDQRTYHGKESVDTRFNRGRSGETPRFHTVNFAQPVRFSSKVGKCPSGWH
HYEGTASCYKVYSSGENYWDAVQTCQKVNGSLATFTTDQELKFILAQEWDMEERPYGRKD
QRRLWVGYQFVITSRNHSMEGHWEVAYKGSAEVFLPPVPIFGTAMSDNENILCAQLQCFH
LPSLRHLGLHSWYAENCYEKSSFLCKRSQTCVDIKDNIVDEGYYFTPKGDDPCLSCTCHN
GEPEMCVAALCERPQGCQQYRKDPKECCKFTCLDPDGSSLFDSMASGMRLIVSCISSFLI
LSLLLFMVHRLRQRRRERIESLIGANLHHFNLGRRMPGFDYGPDGFGTGLTPLHLSDDGE
GGAFHFHEPPPPYTAYKYSDIQHPDDPPPPYEASISPDIILCSSPDQVSHQAAVLGQLST
ASSSNASTPQTTEEPLPPAVLCLAQSQSDTTCSGDVSSSLLVPPKSLQNEAFTSDTQSGP
SPSNCSLNTVV
Download sequence
Identical sequences F6XBY4
8364.ENSXETP00000048449 ENSXETP00000048449

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]