SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|427710028|ref|YP_007052405.1| from Nostoc sp. PCC 7107

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|427710028|ref|YP_007052405.1|
Domain Number 1 Region: 21-347
Classification Level Classification E-value
Superfamily Pectin lyase-like 1.22e-37
Family Filamentous hemagglutinin FhaB, secretion domain 0.015
Further Details:      
 
Domain Number 2 Region: 363-505
Classification Level Classification E-value
Superfamily Pectin lyase-like 0.00000973
Family iota-carrageenase 0.067
Further Details:      
 
Domain Number 3 Region: 479-577
Classification Level Classification E-value
Superfamily Pectin lyase-like 0.0000502
Family Filamentous hemagglutinin FhaB, secretion domain 0.077
Further Details:      
 
Weak hits

Sequence:  gi|427710028|ref|YP_007052405.1|
Domain Number - Region: 529-683
Classification Level Classification E-value
Superfamily Pectin lyase-like 0.00226
Family P22 tailspike protein 0.09
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|427710028|ref|YP_007052405.1|
Sequence length 892
Comment filamentous hemagglutinin family outer membrane protein [Nostoc sp. PCC 7107]
Sequence
MKLTFVGFGFIGAILICTIYNNGVQAQVIPDNTLNTSVGGNSNYTITNGSRVGNNLFHSF
SQFSVPSNGSAVFNNAADIQNIFSRVTGGYVSNIDGLIQTNGSANLFLLNPAGIIFGVNA
RLNIGGSFVGTTANSIKFADGIIFSTDTTTSPLLTMSVPVGLQLGMNAGAIRTQGTPASN
FVDRPSQMFKAKTVALVGSEIDINQTSLTNRDGRIELWALRNAEVGLNNQAQLQLTSPVA
ADWGNIFLRQSSIIDTNGINGGAINIRGRGLTLQDGSGISSNTGTLGQGQGINIKTTEFV
DLLGVSAASQYPTPGLFTSVVGNQGRAGDITVETQRLHIANAGWIQSTVNAAFDFKNFKL
VLSNNSRTGDITIKAADVEVSGYNPFPVNFFRPSAITTLISNGSMNESGKISVVAQRVRL
LDGSRISSNLLGFYIPGFSESVTTGKSGDIAIRAAESLEISGVTPAGLIGAVISSIQPYA
AGQAGNIIIETGNLSLSQGGTISSAVAGSGIAGNIDIDAKAVEVSDPVIDSFSNTVSGIT
VALGEDAAGQGGLINLTADSLHVFNGGQITSSSLGQGSAGSVNLRVKNIDVQGISQNLVN
SNYLPSAIAASSASSFAAGSVNIQSDIVQVRDDAEITVSNTGSGDAGNLNISAKNIFLKN
GANLRSEVNGGSQGNISLDVNEVLLLRHGSKIVTNALGASTGGNININAGFIVGVSNENS
DISANAVLGSGGNIQIATQGIYGLKFRNQLTLKSDITASSQFGVNGTVAINNVGIDPNSG
LIELPANVTDSSQKIATDCSANNNSSFVATGRGGIPQNPTQEIRSDRTWSDIRDISAFQT
TKPVKAQIPKSPEILVQATSWHRNAQGKIELIADKSSVNLPPSLTCAAVNQS
Download sequence
Identical sequences K9QHY3
gi|427710028|ref|YP_007052405.1| WP_015115446.1.60169

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]