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Domain assignment for Solyc00g131710.1.1 from Solanum lycopersicum v2.3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Solyc00g131710.1.1
Domain Number 1 Region: 44-205
Classification Level Classification E-value
Superfamily Ribonuclease H-like 7.84e-40
Family Retroviral integrase, catalytic domain 0.028
Further Details:      
 
Domain Number 2 Region: 316-396
Classification Level Classification E-value
Superfamily Chromo domain-like 0.000000866
Family Chromo domain 0.0081
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Solyc00g131710.1.1
Sequence length 509
Comment evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:16819546-16821204 transcript_region:SL2.40ch00:16819546..16821204+ go_terms:GO:0003676,GO:0005634,GO:0015074 functional_description:"Pol polyprotein (AHRD V1 *-*- POL_MLVFP); contains Interpro domain(s) IPR001584 Integrase, catalytic core "
Sequence
MYRDLKQHFWWSRMKRDIVDFIAKCPNCQQVKYEHQRPGGTLQRMPIPEWKWEGIAMDFV
VGLLKTMGKYDSIWVIVDRLTKSAHFIPVKVTYNAEKLAKLYILEVVRLHGVPPSIISDR
GMQFTSKFWKTLHAELGTRLDLSTAFHPQTDGQSEQTIQVLENMLRACVIEFGGHWDSFL
PLAEFSYNNSYHLSIDMAPFEALYCRRCRSPIGWFDTFEVRPWGTDLLRDSIEKVKSIQE
KLLAAQSRQKEYADRKVRDLEFMEGEKVLLKVSPMKGVMRFGKRGKVSPRYIGPFEVLKR
VREVAYELALPPGLSGVHPVFHVSMLKRYHGDGNYIIRWDSIFLDENLSYEEEPVAILDR
EVRKLRSREIASIKVQWKNRPVEEATWEKEADMREKYPHLFTDSEATDPTTDRQGHDGPS
QGLVSKHLENLKLGTENRLSELCDGMAGRTVTGVTDRHGDFSENPFSELCDDLQDGPSQA
RRPVTGCANPRQSRIFGDVLRDVFGLFFP
Download sequence
Identical sequences Solyc00g131710.1.1 Solyc00g131710.1.1 Sopim00g131710.0.1

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