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Domain assignment for Solyc01g080190.2.1 from Solanum lycopersicum v2.3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Solyc01g080190.2.1
Domain Number 1 Region: 134-154,222-295,363-455,628-680
Classification Level Classification E-value
Superfamily TPR-like 0.0000632
Family Tetratricopeptide repeat (TPR) 0.091
Further Details:      
 
Weak hits

Sequence:  Solyc01g080190.2.1
Domain Number - Region: 38-81
Classification Level Classification E-value
Superfamily RPA2825-like 0.0418
Family RPA2825-like 0.0078
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Solyc01g080190.2.1
Sequence length 700
Comment genomic_reference:SL2.40ch01 gene_region:71913612-71915846 transcript_region:SL2.40ch01:71913612..71915846+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LYJ7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "
Sequence
MIIGIRYKPSFHFLAPFFSLSFPSLKWVSSSSSQAPLDHLQLFLDKDKNTKKQKPNWEFS
LVSAFKSCSANSSITHGQQLHSLVLKSGLQSNIFILNSLITFYVKCGLVNHAKIIFDSCN
KLDAVSCNIMLCGYVKFGFLDDAYELFDKMTERNCVSYTTMIMGWVQKGFWSEGISVFRD
MRCFGVGPNEVTMVNVISAYLHCGGIKVDKMLHGLVLKVGVMDFVHVSTNLLHLYCLGGC
LKDARMLFNEMPEKNVVSWNVMLNGYAKAGLVDLAKEVFEQIVDKDVVSWGTIIDGYLQA
ARLNDAVKRYRDMLYTGLHPNDVMIVDFLSTCGQVMSNFEGRQFHGVAVKMGFNLLDFIQ
ATIIHFYAACGEVDLARLQFEVGNKDHVACWNALIAGLVRNRKIDEARNLFDQMPARDVF
SWSSMISGYSQSEQPDLALELFHEMLAIGVKPNEITMVSVVSSIATLGTLKEGRWTHDYI
CKNSIPLNDNLMAALIDMYAKCASVNDALEVFNQIRKKAVDVSPWNAIICGLAMHGHAQL
SLHIFSDMLRQNIKPNSITFIGVLSACCHAGLVDAGEQHFKSMTKLYNVKPNIKHYGCMV
DLFGRAGRLKEAEELIRSMPMEADIIIWGTLLAACRTHGNTEIGERAAENLARVEPSHGP
SRVLLSNIYADAGKWDDAFVTRQAMRSRGLTRTTAYSGVV
Download sequence
Identical sequences K4AXR3
Sopim01g080190.0.1 Solyc01g080190.2.1 Solyc01g080190.2.1 XP_004229452.1.44838

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