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Domain assignment for Solyc01g096200.2.1 from Solanum lycopersicum v2.3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Solyc01g096200.2.1
Domain Number 1 Region: 335-832,910-977
Classification Level Classification E-value
Superfamily ARM repeat 2.66e-40
Family Armadillo repeat 0.011
Further Details:      
 
Domain Number 2 Region: 258-327
Classification Level Classification E-value
Superfamily RING/U-box 2.31e-25
Family U-box 0.0086
Further Details:      
 
Weak hits

Sequence:  Solyc01g096200.2.1
Domain Number - Region: 1214-1236,1286-1358
Classification Level Classification E-value
Superfamily TPR-like 0.00897
Family Tetratricopeptide repeat (TPR) 0.055
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Solyc01g096200.2.1
Sequence length 1428
Comment genomic_reference:SL2.40ch01 gene_region:79051800-79061053 transcript_region:SL2.40ch01:79051800..79061053- go_terms:GO:0005488,GO:0000151 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7M1E8_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "
Sequence
MPDVIGGPFADVLSATLESILEIVLTSKNVFIEKKSFAELSDYLNRIVPFLKEINRKNIT
DSTPWQNVIQILNQQTVDARQLILECSKKNKVYLLMNCRHIAKRIENITREISRALSCIP
LASLDISSGIKEDIVQVMDSMRTAEFKTAIAEEEILNKIDSGIHQRNVDRSYANKLLVSI
AEAIGVSTESSALRREFEEFKDEIDNARLRKDQAEALQMDQIIALLERADAATSRQEKEK
KYFIKRKSLGNQPLEPLLSFYCPITGEVMTDPVETPSGHTFERCAIEKWLAEGNLCPMTS
TPLKNTMMRPNKTLRQSIEEWKDRNTMITIANMKLKLSSNEGDEVLNCLEQVKDICEQRE
IHREWVIMEDYIPILIKLLDSKSRDIRNLVLEVLCVLAKDGDDAKERIVEVDNALESIVH
SLGRRIGERKSAVALLLELSKCKSVQESIGKVQGCILLLVTMSSCDDNKAAKDARDVLEN
ISFSDDNVILMAQANYFKYLLQRLSSGSSDVKLLMAKTLGEMELTDHNKSSLFEEGVLDS
LLSSLSHSEVEVKQAGVKALLNLSSLPRNGQDMIRKGVMRPLLDMLYRHTASQSLRELVA
ATITNLAFSASSEALSLLDADEDVYELFSLVNLNGPAVQQSILQAFCAMCKSPSGANVKI
KLAQCSAVQVLMQFCEHSNSNVRSDAIKLLCCLIENGNGGVIQEYVDQNFIEILLKIIKT
SQDEEEIASAMGITSNLPKSSQISDWLFAAEGLPVFSKFLDEVKHKSSCKLQLVENAVGT
LCHFTVSINQQTQRIAGLVPKLIRLLDQGTSLTKNRAAICLAQLSENSQTLSRTIPKRSG
LWCFSPSQVELCPIHRGICTLETSFCLVEAGAVGPLVRVLGDTDPGACEASLDALLTLIK
DEKLQSGAKVLAEENAIPSMIKLLNSPSPRLQEKVLNSLERLFRLVEYKQRYGSSAHMPL
VDLTQRGTSNIKSVAAKGCLEPSRLKYQHFKVNLCFFIILNCSKRHLSDRFLHQTLLMNQ
LKQIHANTLRNGIDFTQFLISKIIEIPNIPYAHKVFDNITKPTVFLYNKLIQAYSSHGFP
SQCFSLYIKMRRQGCSPNPHSFTFLFAACSNRSTPIQGQMFHVHFIKWGFEFDIYTLTAL
VDMYAKMSLLPSARKLFDEMEMKDVPIWNSLIAGYAKNGNVVELVIDRAMQLFHEIGRRR
NLCSWNTMIMGLAVHGKGDEALKLFNQMLGEGNTPDDVTFVGAILACTHGGMVAKGWELL
KLMEQRFSIAPKLEHYGCMVDLLGRAGKLQEAYDLIQSMPMRPDCVIWGTILGACSFYGN
VELAEKAAEFLSVLEPWNPGNYVILSNIYARAGRWDGVARLRKLMKSSQITKAAGYSFIE
EGGDIHKFIVEDKSHPKSNEIYSLLDLVTTRLKFDVSTMEIDLDSIAE
Download sequence
Identical sequences K4B008
Solyc01g096200.2.1 Solyc01g096200.2.1 Sopim01g096200.0.1

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