SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for Solyc02g076700.1.1 from Solanum lycopersicum v2.3

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  Solyc02g076700.1.1
Domain Number 1 Region: 41-105,352-408
Classification Level Classification E-value
Superfamily TPR-like 0.000000152
Family Tetratricopeptide repeat (TPR) 0.026
Further Details:      
 
Domain Number 2 Region: 324-449,589-670
Classification Level Classification E-value
Superfamily TPR-like 0.000000313
Family Tetratricopeptide repeat (TPR) 0.065
Further Details:      
 
Domain Number 3 Region: 101-161,221-316
Classification Level Classification E-value
Superfamily TPR-like 0.0000205
Family Tetratricopeptide repeat (TPR) 0.033
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Solyc02g076700.1.1
Sequence length 742
Comment evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36416462-36418690 transcript_region:SL2.40ch02:36416462..36418690- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3D7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "
Sequence
MASLSRGRTIIQQNLKITQLGKRGQIDEAIRVFNGITHPNTVTYNSMISAYAKNGRIINA
RKLFEKMQSKNLISWNTMINGYLFNGQVDKACELFDKMPQRDHFTYALMITCYTRSGELE
KARDVFESLPDRSNIACWNAMITGYAKAGRLDDARKMFGGMPAKNLVSWNSMLSGYTQNG
EMQFGLKFFEDMEEKDVVSWNLLLGGFIEVGDLDSAKEVFAKIPSPNVVSWVTMLSGFAR
YGMILEAEMIFDQIPEKNEVAWNAMLAAYVQNEKIDMAASLFNRMSQRSAVAYTTMIDGY
CRVGKLKEARDLLDQMPYKNVGARTAMISGYIQNNIMDKARWVFDRTATRDVVCWNTMIV
GYAQCGRIDEAFGLFEKMEPKSIVVWNTMIAGYAQVGQMEKALEIFKNMGERNVISWNSL
ISGYTQNGFYVDALKYFITMTRDGKKPDHSTFASTLSSCSNLAAEHIGKQLHQAAIKTGY
VKNLSVCNALIIMYAKCGKIFDAEKMFEDVDNADVISWNSLLAGYALNGCGQEAVKLFQE
MEDKEVVPDEVTFVSVLSACKHAGLSDAGANLFEHMTRKYSITPSCERYACMVDLLGRAG
RLEEAFLLIKGMKENVTVEMWGSLFEACRMHNNIKIAGCAIEKLLELEPHTSTNLVVLSN
MYAELGRWGDVERVRETMKKSGAGRLPGCSWVEDRNQLLVFLCGDTSVQSVENSNMLFTL
TTQMMDMGHMPAMTSFCLDSDN
Download sequence
Identical sequences K4B8P7
Solyc02g076700.1.1 XP_019067832.1.44838 XP_019067833.1.44838 XP_019067834.1.44838 Solyc02g076700.1.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]