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Domain assignment for Solyc02g082100.2.1 from Solanum lycopersicum v2.3

Domain architecture


Domain assignment details

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Strong hits

Sequence:  Solyc02g082100.2.1
Domain Number 1 Region: 1025-1070
Classification Level Classification E-value
Superfamily RING/U-box 0.00000636
Family RING finger domain, C3HC4 0.065
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Solyc02g082100.2.1
Sequence length 1078
Comment genomic_reference:SL2.40ch02 gene_region:40398498-40404153 transcript_region:SL2.40ch02:40398498..40404153+ go_terms:GO:0008270 functional_description:"Neuralized (AHRD V1 *--- B4M452_DROVI); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "
Sequence
MYVWLFLILLISSSDESILRDGLFSICNVLLWGTLKCSKFSPFCQQTLNIAFLIEQVSQE
MASSQVEIASSSSFGHVLRDRNRRDRCTHRDSNVFQKNLKDLVHTHIHSCISSSQPTNTN
THSSDANENSRQHRHVDYADLWVHKPQWDNNENTPTTVDKWDREMVISSRPTKQKGEALE
TTTATTVVEVPNSGGVSTLVRRWRDFETVSKSVNLGNNSNSNPSSAKSNCENAAFADSNV
SQRGDDTCDESSVDGRFETPAASVNGESAGDWEQVYKTAMNDIQGCKNSDTNKEREKLRV
ADIIKKLASSNGEENHENENNCTNAAHLATGECLPRIKTSFDHSEQQLQQRNFFPVLHSP
RIIRGRKALSDLLLQMERDRLRELDTLRERKAVSKFQQRGRIQALLKVRFLRRVTDTRDD
RSTNGTSSESNRVSSSAIMHIREKFNTGSQNGVSDSRSLSREAAENTQENRNSTPNQQRV
QNKGNNAVKVGSELASHKQREGNQKQEIIRESAAMQPGVADSRSNSSPKSEIASTSTRED
HPEPIDPMTLCINVIDSNTQIGKVFPSNQLQEENPHGEVNKKISPRMMTTNVKATNSSNS
QKEMSIHIRHSDSSYSPKHNEVDCSPQAVSPSLLHCTSQLHSSDIPHDQASWENASCQAN
HDKSLEFLETSRSPKDSEQSVHREEHDANKLQHAGTSNEWSSESTKPQSDCEEEATNQNL
VDSDCGWVSDYSHTPSGWDELQSNYQQQLESNQDWINDVSRPREEWEGLRQERYQEMLDP
FLENHDIRQLLNRKSVSIFLNSGLRDKIDQLMASRSQELPNARSGQLEKKVGARMTKEWG
KEEEVISHIETRAAGVDDDEEEAYSGYEDDFEDDNNPIRQQYLKPEELVDQNKASHTLQS
WRNNQDTLPSWSNDQDRGVSDDSYHRPSNSLPQPELSNIYSHHNQQSSSTSTRHPSIEME
LIYELRGHMEQLHQEIFEIRRSINSCMNMQMNLQHSIKDEVAAAIIQSGPVIGSNSDKKG
ANIANCCICYEQQVDSLLYRCGHMCTCFRCAHELLWGTGKCPICETPIIDVVRAYIHS
Download sequence
Identical sequences K4BA80
Sopim02g082100.0.1 XP_004232606.1.44838 Solyc02g082100.2.1 Solyc02g082100.2.1

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